Variant report

Variant	rs17133879
Chromosome Location	chr5:111245961-111245962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1003272	0.83[ASN][1000 genomes]
rs10045343	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10054939	0.82[EUR][1000 genomes]
rs10062983	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10068091	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10075532	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10515435	0.88[ASN][1000 genomes]
rs11241140	0.82[EUR][1000 genomes]
rs11749310	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11949783	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13360997	0.87[ASN][1000 genomes]
rs17133824	0.84[ASN][1000 genomes]
rs17133845	0.84[ASN][1000 genomes]
rs17133847	0.84[ASN][1000 genomes]
rs17133862	0.89[ASN][1000 genomes]
rs17133873	0.94[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs17133882	0.94[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs17133892	0.88[ASN][1000 genomes]
rs28575609	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56243059	0.84[ASN][1000 genomes]
rs56405886	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57227445	0.84[ASN][1000 genomes]
rs58429198	0.88[ASN][1000 genomes]
rs60095412	0.91[ASN][1000 genomes]
rs61169291	0.82[ASN][1000 genomes]
rs657736	0.85[ASN][1000 genomes]
rs6882628	0.83[CHB][hapmap]
rs73787704	0.84[ASN][1000 genomes]
rs73787708	0.85[ASN][1000 genomes]
rs73787724	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7704654	0.82[AMR][1000 genomes]
rs7708790	0.84[ASN][1000 genomes]
rs7710698	0.89[CHB][hapmap]
rs7728161	0.89[ASN][1000 genomes]
rs967985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111244200-111246000	Enhancers	Fetal Heart	heart
2	chr5:111245600-111246400	Weak transcription	Fetal Lung	lung

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