Variant report
| Variant | rs56405886 |
|---|---|
| Chromosome Location | chr5:111258218-111258219 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:111249217..111251575-chr5:111255774..111258652,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1003272 | 0.88[ASN][1000 genomes] |
| rs10515435 | 0.89[ASN][1000 genomes] |
| rs11749310 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13360997 | 0.92[ASN][1000 genomes] |
| rs17133824 | 0.89[ASN][1000 genomes] |
| rs17133845 | 0.89[ASN][1000 genomes] |
| rs17133847 | 0.89[ASN][1000 genomes] |
| rs17133862 | 0.93[ASN][1000 genomes] |
| rs17133873 | 0.91[ASN][1000 genomes] |
| rs17133879 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17133882 | 0.92[ASN][1000 genomes] |
| rs17133892 | 0.89[ASN][1000 genomes] |
| rs1864136 | 0.86[ASN][1000 genomes] |
| rs4404725 | 0.83[ASN][1000 genomes] |
| rs56243059 | 0.89[ASN][1000 genomes] |
| rs57227445 | 0.89[ASN][1000 genomes] |
| rs58429198 | 0.91[ASN][1000 genomes] |
| rs60095412 | 0.91[ASN][1000 genomes] |
| rs61169291 | 0.87[ASN][1000 genomes] |
| rs657736 | 0.90[ASN][1000 genomes] |
| rs6882628 | 0.81[ASN][1000 genomes] |
| rs73787704 | 0.89[ASN][1000 genomes] |
| rs73787708 | 0.90[ASN][1000 genomes] |
| rs73787724 | 0.83[EUR][1000 genomes] |
| rs7705253 | 0.81[ASN][1000 genomes] |
| rs7708380 | 0.81[ASN][1000 genomes] |
| rs7708790 | 0.89[ASN][1000 genomes] |
| rs7710698 | 0.81[ASN][1000 genomes] |
| rs7719956 | 0.82[ASN][1000 genomes] |
| rs7723663 | 0.81[ASN][1000 genomes] |
| rs7728161 | 0.93[ASN][1000 genomes] |
| rs7737873 | 0.82[ASN][1000 genomes] |
| rs967985 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599367 | chr5:110924280-111602713 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111256800-111264800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
