Variant report
| Variant | rs10060791 |
|---|---|
| Chromosome Location | chr5:111215538-111215539 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10036670 | 0.94[EUR][1000 genomes] |
| rs10045343 | 0.84[AFR][1000 genomes] |
| rs10054939 | 0.85[AFR][1000 genomes] |
| rs10062983 | 0.85[AFR][1000 genomes] |
| rs10068091 | 0.85[AFR][1000 genomes] |
| rs10075532 | 0.83[AFR][1000 genomes] |
| rs10075625 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11738263 | 1.00[AMR][1000 genomes] |
| rs11738364 | 0.83[AMR][1000 genomes] |
| rs11742651 | 0.82[EUR][1000 genomes] |
| rs11745819 | 1.00[AMR][1000 genomes] |
| rs11745837 | 1.00[AMR][1000 genomes] |
| rs11750123 | 0.83[EUR][1000 genomes] |
| rs11949783 | 0.85[AFR][1000 genomes] |
| rs1493455 | 1.00[AMR][1000 genomes] |
| rs1494586 | 0.90[AMR][1000 genomes] |
| rs28575609 | 0.85[AFR][1000 genomes] |
| rs60643360 | 0.90[AMR][1000 genomes] |
| rs6862840 | 0.90[AMR][1000 genomes] |
| rs6897269 | 0.82[AMR][1000 genomes] |
| rs73225639 | 0.90[AMR][1000 genomes] |
| rs73225643 | 0.90[AMR][1000 genomes] |
| rs73225644 | 0.90[AMR][1000 genomes] |
| rs73227423 | 0.83[AMR][1000 genomes] |
| rs7705253 | 0.81[AMR][1000 genomes] |
| rs7709342 | 0.90[AMR][1000 genomes] |
| rs7719309 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599367 | chr5:110924280-111602713 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv882712 | chr5:111116271-111233084 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111214600-111216600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
