Variant report

Variant	rs11750123
Chromosome Location	chr5:111176202-111176203
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10036670	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10045343	1.00[ASN][1000 genomes]
rs10054939	1.00[ASN][1000 genomes]
rs10060791	0.83[EUR][1000 genomes]
rs10062983	1.00[ASN][1000 genomes]
rs10068091	1.00[ASN][1000 genomes]
rs10075129	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10075532	1.00[ASN][1000 genomes]
rs10075625	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078382	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10477473	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11742651	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11949783	1.00[ASN][1000 genomes]
rs11952607	0.92[EUR][1000 genomes]
rs17494279	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28575609	1.00[ASN][1000 genomes]
rs28710996	0.90[EUR][1000 genomes]
rs6897269	0.86[EUR][1000 genomes]
rs7705253	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882711	chr5:111116271-111185325	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111172600-111182800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:111176000-111176800	Enhancers	Liver	Liver
3	chr5:111176200-111176800	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links