Variant report

Variant	rs11742651
Chromosome Location	chr5:111182637-111182638
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10036670	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10045343	1.00[CHB][hapmap]
rs10060791	0.82[EUR][1000 genomes]
rs10075129	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10075625	0.85[EUR][1000 genomes]
rs10078382	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10477473	0.96[AMR][1000 genomes]
rs1055975	1.00[ASN][1000 genomes]
rs11750123	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11952607	0.90[EUR][1000 genomes]
rs17494279	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28710996	0.88[EUR][1000 genomes]
rs62370001	1.00[ASN][1000 genomes]
rs62370003	1.00[ASN][1000 genomes]
rs6897269	0.87[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882711	chr5:111116271-111185325	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv968233	chr5:111181516-111183614	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111172600-111182800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:111182200-111183000	Enhancers	Fetal Lung	lung
3	chr5:111182600-111182800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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