Variant report

Variant	rs60643360
Chromosome Location	chr5:111284652-111284653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CAMK4-2	chr5:111284557-111284685	ENSG00000250095.1

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10060791	0.90[AMR][1000 genomes]
rs10075625	0.90[AMR][1000 genomes]
rs10078382	1.00[ASN][1000 genomes]
rs11738263	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738364	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11745819	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745837	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960552	0.91[EUR][1000 genomes]
rs1389310	0.91[EUR][1000 genomes]
rs1389311	0.91[EUR][1000 genomes]
rs1389312	0.91[EUR][1000 genomes]
rs1493455	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57650449	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57696610	0.81[EUR][1000 genomes]
rs664517	0.88[EUR][1000 genomes]
rs6862840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225635	0.88[EUR][1000 genomes]
rs73225639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225647	1.00[ASN][1000 genomes]
rs73227423	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704654	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7709342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709768	0.84[EUR][1000 genomes]
rs7719309	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111283000-111285000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:111283400-111285000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:111283400-111285000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:111283400-111285000	Enhancers	NHLF	lung
5	chr5:111283400-111285200	Enhancers	Osteobl	bone
6	chr5:111283600-111285000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:111283600-111285000	Enhancers	NH-A	brain
8	chr5:111283600-111287000	Enhancers	NHDF-Ad	bronchial
9	chr5:111283800-111285000	Enhancers	HMEC	breast
10	chr5:111283800-111285000	Enhancers	HSMM	muscle
11	chr5:111283800-111285000	Enhancers	HSMMtube	muscle
12	chr5:111283800-111285000	Enhancers	NHEK	skin
13	chr5:111284000-111285000	Enhancers	Adipose Nuclei	Adipose
14	chr5:111284200-111285000	Enhancers	Fetal Muscle Leg	muscle
15	chr5:111284200-111288800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:111284400-111284800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:111284400-111284800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:111284400-111285000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:111284400-111288800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:111284600-111284800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links