Variant report

Variant	rs10481698
Chromosome Location	chr9:98824252-98824253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98636264..98639064-chr9:98822222..98824808,3	MCF-7	breast:
2	chr9:98636330..98638278-chr9:98823569..98825310,2	K562	blood:
3	chr9:98814315..98817027-chr9:98823230..98826158,2	MCF-7	breast:
4	chr9:98819421..98821017-chr9:98821751..98824395,2	MCF-7	breast:
5	chr9:98822681..98824476-chr9:98825586..98827527,2	K562	blood:

Variant related genes	Relation type
ENSG00000175611	Chromatin interaction
ENSG00000182150	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10481697	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989096	0.97[AFR][1000 genomes]
rs10989106	0.91[ASW][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11999390	1.00[EUR][1000 genomes]
rs12340544	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55989349	1.00[EUR][1000 genomes]
rs58506259	1.00[EUR][1000 genomes]
rs73536566	1.00[EUR][1000 genomes]
rs73536567	1.00[EUR][1000 genomes]
rs73536571	1.00[EUR][1000 genomes]
rs73536572	1.00[EUR][1000 genomes]
rs73654815	1.00[EUR][1000 genomes]
rs73654816	1.00[EUR][1000 genomes]
rs73654817	1.00[EUR][1000 genomes]
rs73654819	1.00[EUR][1000 genomes]
rs73654820	1.00[EUR][1000 genomes]
rs73654822	1.00[EUR][1000 genomes]
rs73654824	1.00[EUR][1000 genomes]
rs7867155	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98810200-98827200	Weak transcription	Aorta	Aorta
2	chr9:98812200-98829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:98812800-98829400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:98815200-98824600	Weak transcription	Fetal Brain Male	brain
5	chr9:98819800-98832000	Weak transcription	Gastric	stomach
6	chr9:98823000-98824800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr9:98823200-98824400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:98823200-98824400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr9:98823200-98824400	Enhancers	Placenta	Placenta
10	chr9:98823200-98824400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr9:98823200-98824400	Enhancers	Stomach Mucosa	stomach
12	chr9:98823200-98824600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:98823200-98824600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:98823200-98824600	Enhancers	Fetal Muscle Leg	muscle
15	chr9:98823200-98824800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:98823200-98824800	Enhancers	Duodenum Mucosa	Duodenum
17	chr9:98823200-98825000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:98823200-98825200	Enhancers	Spleen	Spleen
19	chr9:98823200-98825800	Enhancers	Fetal Stomach	stomach
20	chr9:98823200-98827600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:98823400-98824400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:98823400-98824400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr9:98823400-98824400	Enhancers	Primary hematopoietic stem cells	blood
24	chr9:98823400-98824400	Enhancers	HUVEC	blood vessel
25	chr9:98823400-98824800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr9:98823400-98824800	Enhancers	Fetal Intestine Small	intestine
27	chr9:98823400-98824800	Enhancers	NHDF-Ad	bronchial
28	chr9:98823400-98825200	Enhancers	Fetal Lung	lung
29	chr9:98823600-98824400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr9:98823600-98824600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr9:98823600-98824800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:98823600-98824800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:98823600-98825000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr9:98823600-98825000	Enhancers	Ovary	ovary
35	chr9:98823800-98824400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:98823800-98824400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
37	chr9:98824000-98824600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:98824000-98824800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:98824000-98824800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr9:98824000-98824800	Enhancers	Fetal Kidney	kidney
41	chr9:98824200-98824400	Enhancers	Stomach Smooth Muscle	stomach
42	chr9:98824200-98824400	Enhancers	A549	lung
43	chr9:98824200-98824800	Enhancers	Fetal Intestine Large	intestine
44	chr9:98824200-98826800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:98824200-98826800	Weak transcription	Pancreas	Pancrea
46	chr9:98824200-98827000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:98824200-98827200	Weak transcription	Adipose Nuclei	Adipose
48	chr9:98824200-98828400	Weak transcription	Right Atrium	heart
49	chr9:98824200-98829000	Weak transcription	HSMMtube	muscle
50	chr9:98824200-98829400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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