Variant report

Variant	rs73536571
Chromosome Location	chr9:98782920-98782921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HSD17B3-1	chr9:98782876-98783563	ENSG00000225194
2	lnc-HSD17B3-1	chr9:98782014-98783563	ENSG00000225194.2
3	lnc-HSD17B3-1	chr9:98782031-98783563	NONHSAT133411
4	lnc-HSD17B3-1	chr9:98782014-98783563	NR_024129
5	lnc-HSD17B3-1	chr9:98782031-98783563	NONHSAT133410

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10481697	1.00[EUR][1000 genomes]
rs10481698	1.00[EUR][1000 genomes]
rs11999390	1.00[EUR][1000 genomes]
rs12340544	1.00[EUR][1000 genomes]
rs55989349	1.00[EUR][1000 genomes]
rs58506259	1.00[EUR][1000 genomes]
rs73536566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536572	1.00[EUR][1000 genomes]
rs73654815	1.00[EUR][1000 genomes]
rs73654816	1.00[EUR][1000 genomes]
rs73654817	1.00[EUR][1000 genomes]
rs73654819	1.00[EUR][1000 genomes]
rs73654820	1.00[EUR][1000 genomes]
rs73654822	1.00[EUR][1000 genomes]
rs73654824	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv524266	chr9:98780606-98804274	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3359379	chr9:98782656-98785504	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98771600-98783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:98775200-98783000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:98777200-98783000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr9:98780400-98783000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:98782400-98783000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:98782400-98783000	Bivalent Enhancer	Fetal Thymus	thymus
7	chr9:98782600-98783000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:98782600-98783000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:98782600-98783000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:98782600-98783000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr9:98782600-98783000	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr9:98782600-98783000	Enhancers	Lung	lung
13	chr9:98782600-98783000	Bivalent Enhancer	Psoas Muscle	Psoas
14	chr9:98782600-98783000	Bivalent Enhancer	Stomach Mucosa	stomach
15	chr9:98782600-98783000	Bivalent Enhancer	GM12878-XiMat	blood
16	chr9:98782600-98783400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr9:98782600-98783400	Flanking Active TSS	Spleen	Spleen
18	chr9:98782600-98784400	Active TSS	Ovary	ovary
19	chr9:98782600-98784600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr9:98782600-98784600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr9:98782600-98785200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
22	chr9:98782600-98785400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr9:98782600-98785400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr9:98782800-98783000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:98782800-98783000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:98782800-98783000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:98782800-98783000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:98782800-98783000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
29	chr9:98782800-98783000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
30	chr9:98782800-98783000	Bivalent Enhancer	Primary B cells from cord blood	blood
31	chr9:98782800-98783000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
32	chr9:98782800-98783000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:98782800-98783000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:98782800-98783000	Enhancers	Aorta	Aorta
35	chr9:98782800-98783000	Bivalent Enhancer	Brain Germinal Matrix	brain
36	chr9:98782800-98783000	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
37	chr9:98782800-98783000	Enhancers	Esophagus	oesophagus
38	chr9:98782800-98783000	Bivalent Enhancer	Fetal Intestine Large	intestine
39	chr9:98782800-98783000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
40	chr9:98782800-98783000	Bivalent Enhancer	Placenta	Placenta
41	chr9:98782800-98783000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
42	chr9:98782800-98783000	Enhancers	Gastric	stomach
43	chr9:98782800-98783000	Bivalent Enhancer	Left Ventricle	heart
44	chr9:98782800-98783000	Enhancers	Pancreas	Pancrea
45	chr9:98782800-98783000	Enhancers	Placenta Amnion	Placenta Amnion
46	chr9:98782800-98783000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
47	chr9:98782800-98783000	Flanking Active TSS	Right Atrium	heart
48	chr9:98782800-98783000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
49	chr9:98782800-98783000	Bivalent Enhancer	Small Intestine	intestine
50	chr9:98782800-98783000	Bivalent Enhancer	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links