Variant report

Variant	rs73536566
Chromosome Location	chr9:98781597-98781598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98779093..98782879-chr9:98784217..98786227,3	K562	blood:
2	chr9:98770913..98773359-chr9:98780439..98781981,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10481697	1.00[EUR][1000 genomes]
rs10481698	1.00[EUR][1000 genomes]
rs11999390	1.00[EUR][1000 genomes]
rs12340544	1.00[EUR][1000 genomes]
rs55989349	1.00[EUR][1000 genomes]
rs58506259	1.00[EUR][1000 genomes]
rs73536567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536572	1.00[EUR][1000 genomes]
rs73654815	1.00[EUR][1000 genomes]
rs73654816	1.00[EUR][1000 genomes]
rs73654817	1.00[EUR][1000 genomes]
rs73654819	1.00[EUR][1000 genomes]
rs73654820	1.00[EUR][1000 genomes]
rs73654822	1.00[EUR][1000 genomes]
rs73654824	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv524266	chr9:98780606-98804274	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98714000-98782600	Weak transcription	HUVEC	blood vessel
2	chr9:98734600-98782400	Weak transcription	NHEK	skin
3	chr9:98747800-98782800	Weak transcription	Fetal Kidney	kidney
4	chr9:98748000-98782600	Weak transcription	HMEC	breast
5	chr9:98748400-98782800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:98765800-98781600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:98768600-98782600	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:98771600-98781600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:98771600-98782600	Weak transcription	Placenta	Placenta
10	chr9:98771600-98782800	Weak transcription	A549	lung
11	chr9:98771600-98783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:98771800-98781800	Weak transcription	Right Ventricle	heart
13	chr9:98771800-98782600	Weak transcription	Ovary	ovary
14	chr9:98772000-98781600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:98772200-98782600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:98772200-98782800	Weak transcription	Brain Angular Gyrus	brain
17	chr9:98772600-98782400	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:98773000-98781600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:98773000-98781600	Weak transcription	Brain Germinal Matrix	brain
20	chr9:98773600-98782600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr9:98773800-98782400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:98773800-98782800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:98774000-98782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:98774600-98781800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr9:98774600-98782600	Weak transcription	Brain Anterior Caudate	brain
26	chr9:98775200-98781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:98775200-98782800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:98775200-98783000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:98776600-98782800	Weak transcription	Brain Substantia Nigra	brain
30	chr9:98776600-98782800	Weak transcription	Gastric	stomach
31	chr9:98777000-98782400	Weak transcription	Fetal Lung	lung
32	chr9:98777200-98781600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr9:98777200-98781600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr9:98777200-98781800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:98777200-98781800	Weak transcription	Fetal Intestine Large	intestine
36	chr9:98777200-98782600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:98777200-98782600	Weak transcription	HepG2	liver
38	chr9:98777200-98782800	Weak transcription	Esophagus	oesophagus
39	chr9:98777200-98783000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr9:98778800-98782800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:98778800-98782800	Weak transcription	HSMM	muscle
42	chr9:98779000-98782800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr9:98779200-98782600	Weak transcription	GM12878-XiMat	blood
44	chr9:98779400-98782800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr9:98779600-98781800	Weak transcription	Thymus	Thymus
46	chr9:98779600-98782000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr9:98779600-98782400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:98779600-98782800	Weak transcription	Aorta	Aorta
49	chr9:98779600-98782800	Weak transcription	Liver	Liver
50	chr9:98779800-98781600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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