Variant report

Variant	rs55989349
Chromosome Location	chr9:98793428-98793429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98783900..98786083-chr9:98790874..98793453,2	K562	blood:
2	chr9:98793079..98797604-chr9:98797988..98801744,7	MCF-7	breast:
3	chr9:98790248..98792722-chr9:98793401..98795775,2	MCF-7	breast:
4	chr9:98790389..98794152-chr9:98794649..98798124,5	K562	blood:

Variant related genes	Relation type
ENSG00000225194	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10481697	1.00[EUR][1000 genomes]
rs10481698	1.00[EUR][1000 genomes]
rs11999390	1.00[EUR][1000 genomes]
rs12340544	1.00[EUR][1000 genomes]
rs58506259	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536566	1.00[EUR][1000 genomes]
rs73536567	1.00[EUR][1000 genomes]
rs73536571	1.00[EUR][1000 genomes]
rs73536572	1.00[EUR][1000 genomes]
rs73654815	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654816	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654819	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654820	1.00[EUR][1000 genomes]
rs73654822	1.00[EUR][1000 genomes]
rs73654824	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv524266	chr9:98780606-98804274	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98790000-98793600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:98790200-98795800	Weak transcription	Esophagus	oesophagus
3	chr9:98790400-98793800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:98790400-98794200	Weak transcription	Spleen	Spleen
5	chr9:98790800-98810800	Weak transcription	Brain Angular Gyrus	brain
6	chr9:98791200-98796800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:98792000-98795200	Enhancers	Ovary	ovary
8	chr9:98792600-98793600	Weak transcription	Fetal Intestine Small	intestine
9	chr9:98792600-98794400	Enhancers	Fetal Stomach	stomach
10	chr9:98792600-98794600	Enhancers	Gastric	stomach
11	chr9:98792800-98794600	Enhancers	Liver	Liver
12	chr9:98793000-98793800	Enhancers	Colonic Mucosa	Colon
13	chr9:98793000-98794000	Enhancers	Fetal Muscle Trunk	muscle
14	chr9:98793000-98794200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:98793000-98794200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr9:98793000-98794200	Enhancers	Fetal Muscle Leg	muscle
17	chr9:98793000-98794200	Enhancers	Lung	lung
18	chr9:98793000-98794200	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:98793000-98794400	Enhancers	Fetal Lung	lung
20	chr9:98793000-98794400	Enhancers	Placenta	Placenta
21	chr9:98793000-98794600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:98793000-98794600	Enhancers	Pancreas	Pancrea
23	chr9:98793000-98794600	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:98793000-98794800	Enhancers	Right Atrium	heart
25	chr9:98793200-98793600	Enhancers	Brain Substantia Nigra	brain
26	chr9:98793200-98793600	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr9:98793200-98794000	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr9:98793200-98794200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr9:98793200-98794200	Enhancers	Duodenum Mucosa	Duodenum
30	chr9:98793200-98794200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:98793200-98794200	Enhancers	Stomach Mucosa	stomach
32	chr9:98793200-98794400	Enhancers	Brain Anterior Caudate	brain
33	chr9:98793200-98794400	Enhancers	Brain Hippocampus Middle	brain
34	chr9:98793200-98794400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:98793200-98794400	Enhancers	Colon Smooth Muscle	Colon
36	chr9:98793400-98793600	Enhancers	Fetal Heart	heart
37	chr9:98793400-98793800	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr9:98793400-98794000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr9:98793400-98794000	Bivalent Enhancer	Osteobl	bone
40	chr9:98793400-98794200	Enhancers	Right Ventricle	heart
41	chr9:98793400-98794600	Weak transcription	Aorta	Aorta
42	chr9:98793400-98794600	Enhancers	A549	lung

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