Variant report

Variant	rs10483149
Chromosome Location	chr22:28811488-28811489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16986172	0.91[YRI][hapmap]
rs16986240	0.91[YRI][hapmap]
rs16986374	1.00[AFR][1000 genomes]
rs16986390	1.00[AFR][1000 genomes]
rs16986392	1.00[AFR][1000 genomes]
rs16986403	1.00[AFR][1000 genomes]
rs16986405	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16986408	1.00[AFR][1000 genomes]
rs16986409	1.00[AFR][1000 genomes]
rs16986410	1.00[AFR][1000 genomes]
rs16986419	0.93[AFR][1000 genomes]
rs16986422	1.00[AFR][1000 genomes]
rs16986425	1.00[AFR][1000 genomes]
rs16986435	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16986449	0.97[AFR][1000 genomes]
rs16986454	0.97[AFR][1000 genomes]
rs16986458	0.90[AFR][1000 genomes]
rs16986471	0.97[AFR][1000 genomes]
rs16986480	0.97[AFR][1000 genomes]
rs16986487	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16986494	0.97[AFR][1000 genomes]
rs16986542	0.97[AFR][1000 genomes]
rs16986546	0.97[AFR][1000 genomes]
rs17881716	0.90[AFR][1000 genomes]
rs2103601	1.00[YRI][hapmap]
rs57188662	0.81[AFR][1000 genomes]
rs58065411	0.97[AFR][1000 genomes]
rs58858940	0.97[AFR][1000 genomes]
rs59463287	0.97[AFR][1000 genomes]
rs60435869	0.97[AFR][1000 genomes]
rs9625433	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv962786	chr22:28810262-28812638	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28793000-28814000	Weak transcription	Left Ventricle	heart
2	chr22:28793000-28819800	Weak transcription	Fetal Intestine Small	intestine
3	chr22:28798800-28821200	Weak transcription	Dnd41	blood
4	chr22:28806200-28813000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr22:28806800-28815400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr22:28806800-28815800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr22:28807400-28821200	Weak transcription	Hela-S3	cervix
8	chr22:28807600-28814000	Weak transcription	Brain Germinal Matrix	brain
9	chr22:28808400-28821400	Weak transcription	Gastric	stomach
10	chr22:28808400-28821800	Weak transcription	Psoas Muscle	Psoas
11	chr22:28808800-28813000	Weak transcription	Aorta	Aorta
12	chr22:28810400-28811800	Enhancers	Fetal Brain Male	brain
13	chr22:28810600-28812800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr22:28810600-28813600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr22:28810600-28813600	Weak transcription	Fetal Brain Female	brain
16	chr22:28810600-28814800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr22:28810600-28815000	Weak transcription	HepG2	liver
18	chr22:28810600-28815200	Weak transcription	Fetal Lung	lung
19	chr22:28810600-28816000	Weak transcription	Ovary	ovary
20	chr22:28810600-28821800	Weak transcription	Adipose Nuclei	Adipose
21	chr22:28810800-28812200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr22:28810800-28813400	Weak transcription	Small Intestine	intestine
23	chr22:28811000-28821600	Weak transcription	Pancreas	Pancrea
24	chr22:28811400-28811800	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links