Variant report

Variant	rs16986403
Chromosome Location	chr22:28819998-28819999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10483149	1.00[AFR][1000 genomes]
rs16986374	1.00[AFR][1000 genomes]
rs16986390	1.00[AFR][1000 genomes]
rs16986392	1.00[AFR][1000 genomes]
rs16986405	1.00[AFR][1000 genomes]
rs16986408	1.00[AFR][1000 genomes]
rs16986409	1.00[AFR][1000 genomes]
rs16986410	1.00[AFR][1000 genomes]
rs16986419	0.93[AFR][1000 genomes]
rs16986422	1.00[AFR][1000 genomes]
rs16986425	1.00[AFR][1000 genomes]
rs16986435	0.97[AFR][1000 genomes]
rs16986449	0.97[AFR][1000 genomes]
rs16986454	0.97[AFR][1000 genomes]
rs16986458	0.90[AFR][1000 genomes]
rs16986471	0.97[AFR][1000 genomes]
rs16986480	0.97[AFR][1000 genomes]
rs16986487	0.97[AFR][1000 genomes]
rs16986494	0.97[AFR][1000 genomes]
rs16986542	0.97[AFR][1000 genomes]
rs16986546	0.97[AFR][1000 genomes]
rs17881716	0.90[AFR][1000 genomes]
rs57188662	0.81[AFR][1000 genomes]
rs58065411	0.97[AFR][1000 genomes]
rs58858940	0.97[AFR][1000 genomes]
rs59463287	0.97[AFR][1000 genomes]
rs60435869	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28798800-28821200	Weak transcription	Dnd41	blood
2	chr22:28807400-28821200	Weak transcription	Hela-S3	cervix
3	chr22:28808400-28821400	Weak transcription	Gastric	stomach
4	chr22:28808400-28821800	Weak transcription	Psoas Muscle	Psoas
5	chr22:28810600-28821800	Weak transcription	Adipose Nuclei	Adipose
6	chr22:28811000-28821600	Weak transcription	Pancreas	Pancrea
7	chr22:28816000-28820600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr22:28816200-28820000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr22:28816200-28820200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr22:28816200-28820400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr22:28816200-28820600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr22:28816200-28826400	Weak transcription	Stomach Mucosa	stomach
13	chr22:28816400-28820600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr22:28816400-28820600	Weak transcription	Fetal Brain Female	brain
15	chr22:28816400-28820600	Weak transcription	Fetal Lung	lung
16	chr22:28816600-28820600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr22:28818000-28825200	Weak transcription	Fetal Brain Male	brain
18	chr22:28818200-28820600	Weak transcription	Osteobl	bone
19	chr22:28819000-28820400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr22:28819400-28821600	Weak transcription	Ovary	ovary
21	chr22:28819600-28821800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr22:28819800-28820200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr22:28819800-28820200	Weak transcription	Brain Germinal Matrix	brain
24	chr22:28819800-28821200	Enhancers	A549	lung

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