Variant report

Variant	rs16986405
Chromosome Location	chr22:28820871-28820872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10483149	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16986172	1.00[MKK][hapmap];0.91[YRI][hapmap]
rs16986240	0.91[YRI][hapmap]
rs16986374	1.00[AFR][1000 genomes]
rs16986390	1.00[AFR][1000 genomes]
rs16986392	1.00[AFR][1000 genomes]
rs16986403	1.00[AFR][1000 genomes]
rs16986408	1.00[AFR][1000 genomes]
rs16986409	1.00[AFR][1000 genomes]
rs16986410	1.00[AFR][1000 genomes]
rs16986419	0.93[AFR][1000 genomes]
rs16986422	1.00[AFR][1000 genomes]
rs16986425	1.00[AFR][1000 genomes]
rs16986435	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16986449	0.97[AFR][1000 genomes]
rs16986454	0.97[AFR][1000 genomes]
rs16986458	0.90[AFR][1000 genomes]
rs16986471	0.97[AFR][1000 genomes]
rs16986480	0.97[AFR][1000 genomes]
rs16986487	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16986494	0.97[AFR][1000 genomes]
rs16986542	0.97[AFR][1000 genomes]
rs16986546	0.97[AFR][1000 genomes]
rs17881716	0.90[AFR][1000 genomes]
rs2103601	1.00[YRI][hapmap]
rs57188662	0.81[AFR][1000 genomes]
rs58065411	0.97[AFR][1000 genomes]
rs58858940	0.97[AFR][1000 genomes]
rs59463287	0.97[AFR][1000 genomes]
rs60435869	0.97[AFR][1000 genomes]
rs9625433	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28798800-28821200	Weak transcription	Dnd41	blood
2	chr22:28807400-28821200	Weak transcription	Hela-S3	cervix
3	chr22:28808400-28821400	Weak transcription	Gastric	stomach
4	chr22:28808400-28821800	Weak transcription	Psoas Muscle	Psoas
5	chr22:28810600-28821800	Weak transcription	Adipose Nuclei	Adipose
6	chr22:28811000-28821600	Weak transcription	Pancreas	Pancrea
7	chr22:28816200-28826400	Weak transcription	Stomach Mucosa	stomach
8	chr22:28818000-28825200	Weak transcription	Fetal Brain Male	brain
9	chr22:28819400-28821600	Weak transcription	Ovary	ovary
10	chr22:28819600-28821800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr22:28819800-28821200	Enhancers	A549	lung
12	chr22:28820200-28821400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr22:28820200-28821400	Enhancers	Brain Germinal Matrix	brain
14	chr22:28820200-28822200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr22:28820400-28821400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr22:28820400-28821600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr22:28820400-28822200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr22:28820400-28823600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr22:28820400-28823600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr22:28820600-28821000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr22:28820600-28821000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr22:28820600-28821000	Enhancers	Fetal Brain Female	brain
23	chr22:28820600-28821400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr22:28820600-28821400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr22:28820600-28821400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr22:28820600-28821600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr22:28820600-28821600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr22:28820600-28822000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr22:28820600-28822000	Enhancers	Fetal Lung	lung
30	chr22:28820600-28822000	Enhancers	HSMM	muscle
31	chr22:28820600-28823200	Enhancers	HepG2	liver
32	chr22:28820600-28823200	Enhancers	Osteobl	bone
33	chr22:28820800-28821600	Weak transcription	Aorta	Aorta
34	chr22:28820800-28823000	Enhancers	NHDF-Ad	bronchial
35	chr22:28820800-28837400	Weak transcription	HSMMtube	muscle

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