Variant report

Variant	rs10483160
Chromosome Location	chr22:32077247-32077248
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32071157..32073210-chr22:32075735..32077761,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs131231	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16985133	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16989495	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16989498	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes]
rs16989528	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16989571	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs41282571	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41304673	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55735011	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57421726	0.80[EUR][1000 genomes]
rs58085726	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5998069	0.82[CHB][hapmap]
rs5998074	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs61080919	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61103434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7286557	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7287752	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7291674	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7293134	0.82[CEU][hapmap]
rs8136615	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs917207	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32067400-32078800	Weak transcription	HepG2	liver
2	chr22:32068400-32080400	Weak transcription	Hela-S3	cervix
3	chr22:32072600-32078800	Weak transcription	Esophagus	oesophagus
4	chr22:32072600-32080600	Weak transcription	Fetal Heart	heart
5	chr22:32072600-32081000	Weak transcription	Aorta	Aorta
6	chr22:32073000-32079000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr22:32073200-32078200	Weak transcription	Fetal Intestine Large	intestine
8	chr22:32073200-32078600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr22:32073200-32078600	Weak transcription	Brain Angular Gyrus	brain
10	chr22:32073200-32078600	Weak transcription	Colonic Mucosa	Colon
11	chr22:32073200-32078600	Weak transcription	Right Ventricle	heart
12	chr22:32073200-32078600	Weak transcription	Spleen	Spleen
13	chr22:32073200-32078800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr22:32073200-32078800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:32073200-32078800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr22:32073200-32079000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr22:32073200-32079000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr22:32073200-32079000	Weak transcription	GM12878-XiMat	blood
19	chr22:32073200-32079200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr22:32073200-32079200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr22:32073200-32079200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr22:32073200-32079200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr22:32073200-32079200	Weak transcription	Brain Substantia Nigra	brain
24	chr22:32073200-32079200	Weak transcription	Fetal Lung	lung
25	chr22:32073200-32079200	Weak transcription	Pancreas	Pancrea
26	chr22:32073200-32079400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr22:32073200-32080800	Weak transcription	Stomach Mucosa	stomach
28	chr22:32073200-32080800	Weak transcription	A549	lung
29	chr22:32073200-32087200	Weak transcription	Fetal Kidney	kidney
30	chr22:32073200-32089000	Weak transcription	Fetal Brain Male	brain
31	chr22:32073200-32091200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr22:32073200-32098600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr22:32073400-32077800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr22:32073400-32078000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr22:32073400-32078000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr22:32073400-32078000	Weak transcription	Fetal Intestine Small	intestine
37	chr22:32073400-32078200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr22:32073400-32078200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr22:32073400-32078200	Weak transcription	Fetal Stomach	stomach
40	chr22:32073400-32078400	Weak transcription	Placenta	Placenta
41	chr22:32073400-32078600	Weak transcription	Primary T cells from cord blood	blood
42	chr22:32073400-32078600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr22:32073400-32078600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr22:32073400-32078600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr22:32073400-32078600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr22:32073400-32078600	Weak transcription	Brain Germinal Matrix	brain
47	chr22:32073400-32078600	Weak transcription	Thymus	Thymus
48	chr22:32073400-32078800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr22:32073400-32078800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr22:32073400-32078800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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