Variant report

Variant	rs16989495
Chromosome Location	chr22:32194581-32194582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:31936958-31958600..22:32188129-32210582	K562	blood:
2	22:32188129-32210582..22:32846948-32860159	K562	blood:
3	chr22:32193751..32196509-chr22:32203808..32206428,2	K562	blood:

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction
ENSG00000214093	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10483160	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs131231	1.00[JPT][hapmap]
rs16985133	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16989498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989571	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16989610	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs41282571	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41304673	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41420645	1.00[JPT][hapmap]
rs55735011	0.82[EUR][1000 genomes]
rs57421726	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57754878	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58085726	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5998074	1.00[JPT][hapmap]
rs61080919	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61103434	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61676179	1.00[ASN][1000 genomes]
rs7286557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7287752	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7291674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8136615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs917207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32150800-32212800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:32151000-32210800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:32151400-32217400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr22:32159600-32207600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:32164600-32196000	Weak transcription	Hela-S3	cervix
6	chr22:32165000-32197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr22:32171200-32195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:32171200-32204200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr22:32172800-32221000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr22:32175200-32213800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr22:32175800-32202000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr22:32176000-32194600	Weak transcription	Fetal Brain Male	brain
14	chr22:32176000-32198600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr22:32176800-32196200	Weak transcription	NHLF	lung
16	chr22:32176800-32198800	Weak transcription	A549	lung
17	chr22:32176800-32200000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr22:32177000-32194600	Weak transcription	Colonic Mucosa	Colon
19	chr22:32178200-32199600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr22:32180000-32198600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr22:32181800-32196200	Weak transcription	HMEC	breast
22	chr22:32181800-32198600	Weak transcription	NHDF-Ad	bronchial
23	chr22:32182200-32209800	Strong transcription	Fetal Stomach	stomach
24	chr22:32186600-32196200	Weak transcription	NHEK	skin
25	chr22:32186600-32198400	Weak transcription	K562	blood
26	chr22:32187400-32198800	Weak transcription	Fetal Heart	heart
27	chr22:32187800-32222000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr22:32188000-32220000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr22:32188600-32222600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr22:32188800-32210200	Strong transcription	Fetal Intestine Small	intestine
31	chr22:32188800-32214200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr22:32189000-32202600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr22:32189400-32204200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr22:32189600-32194600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr22:32189800-32204200	Strong transcription	Fetal Muscle Leg	muscle
37	chr22:32189800-32225200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr22:32190600-32203800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr22:32190800-32194600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr22:32190800-32195800	Weak transcription	HUVEC	blood vessel
41	chr22:32191200-32196600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr22:32191600-32207800	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr22:32191800-32194600	Weak transcription	GM12878-XiMat	blood
44	chr22:32191800-32208000	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr22:32192200-32209600	Strong transcription	Fetal Intestine Large	intestine
46	chr22:32192400-32196200	Strong transcription	Fetal Kidney	kidney
47	chr22:32192400-32196400	Strong transcription	Brain Hippocampus Middle	brain
48	chr22:32192400-32203000	Strong transcription	Brain Cingulate Gyrus	brain
49	chr22:32192400-32203200	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr22:32192400-32204600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links