Variant report

Variant	rs61080919
Chromosome Location	chr22:32062613-32062614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:38)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32061138-32064448..22:32102727-32109893	GM12878	blood:
2	22:32061138-32064448..22:32338420-32342898	GM12878	blood:
3	22:32061138-32064448..22:32920308-32927723	Hela-S3	cervix:
4	22:31978142-31983723..22:32061138-32064448	GM12878	blood:
5	22:31864703-31891033..22:32061138-32064448	GM12878	blood:
6	22:31836635-31847259..22:32061138-32064448	GM12878	blood:
7	chr22:32061183..32063284-chr22:32147605..32150438,2	K562	blood:
8	22:32061138-32064448..22:32477762-32487457	GM12878	blood:
9	22:32061138-32064448..22:32096851-32100847	GM12878	blood:
10	22:32012966-32043914..22:32061138-32064448	K562	blood:
11	22:31961151-31976153..22:32061138-32064448	K562	blood:
12	22:32061138-32064448..22:32264718-32278135	GM12878	blood:
13	chr22:32061496..32064184-chr22:32345416..32347899,2	K562	blood:
14	22:32061138-32064448..22:33190123-33206921	K562	blood:
15	22:32061138-32064448..22:32868055-32872511	GM12878	blood:
16	22:32061138-32064448..22:32188129-32210582	GM12878	blood:
17	22:31914965-31930706..22:32061138-32064448	K562	blood:
18	22:32061138-32064448..22:32878464-32886640	K562	blood:
19	chr22:32061806..32063858-chr22:32339337..32341802,2	MCF-7	breast:
20	22:32061138-32064448..22:32594665-32606395	K562	blood:
21	22:32061138-32064448..22:32807141-32809335	GM12878	blood:
22	chr22:32057222..32060101-chr22:32060564..32063470,2	K562	blood:
23	22:32061138-32064448..22:32802848-32805157	GM12878	blood:
24	22:32061138-32064448..22:32170492-32188129	GM12878	blood:
25	22:32061138-32064448..22:32162110-32166713	GM12878	blood:
26	chr22:32061479..32063132-chr22:32339214..32341301,2	K562	blood:
27	22:32061138-32064448..22:32740683-32750950	GM12878	blood:
28	22:32061138-32064448..22:32552403-32557711	K562	blood:
29	22:32061138-32064448..22:32764253-32784733	GM12878	blood:
30	22:32061138-32064448..22:32750950-32761732	H1-hESC	embryonic stem cell:	embryo
31	22:32061138-32064448..22:32860159-32865649	Hela-S3	cervix:
32	22:32061138-32064448..22:32211896-32215168	GM12878	blood:
33	22:32061138-32064448..22:32228866-32235273	GM12878	blood:
34	chr22:32057091..32059812-chr22:32060274..32063156,2	MCF-7	breast:
35	22:32061138-32064448..22:32334260-32338420	GM12878	blood:
36	22:32061138-32064448..22:32342898-32343477	GM12878	blood:
37	22:31803954-31807204..22:32061138-32064448	GM12878	blood:
38	22:32061138-32064448..22:32292186-32294405	GM12878	blood:

No data

Variant related genes	Relation type
ENSG00000243519	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000252909	Chromatin interaction
ENSG00000100234	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000128276	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000271093	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000100220	Chromatin interaction
ENSG00000233733	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000128253	Chromatin interaction
ENSG00000230736	Chromatin interaction
ENSG00000100170	Chromatin interaction
ENSG00000205856	Chromatin interaction
ENSG00000254127	Chromatin interaction
ENSG00000236132	Chromatin interaction
ENSG00000242082	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000230120	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10483160	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16985133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989495	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16989498	0.80[EUR][1000 genomes]
rs16989528	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41282571	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41304673	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55735011	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57421726	0.80[EUR][1000 genomes]
rs58085726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61103434	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7286557	0.88[EUR][1000 genomes]
rs7287752	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7291674	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8136615	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs917207	0.80[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32058800-32063400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr22:32058800-32072400	Weak transcription	Fetal Heart	heart
3	chr22:32059000-32063800	Weak transcription	HMEC	breast
4	chr22:32059000-32066600	Weak transcription	Hela-S3	cervix
5	chr22:32059000-32067000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr22:32059000-32070000	Weak transcription	Primary B cells from cord blood	blood
7	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr22:32061800-32066600	Weak transcription	HepG2	liver
10	chr22:32061800-32066600	Weak transcription	K562	blood
11	chr22:32061800-32066800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr22:32061800-32067000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr22:32062000-32067000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr22:32062200-32066800	Weak transcription	Placenta	Placenta

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