Variant report

Variant	rs16985133
Chromosome Location	chr22:32059436-32059437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32053085-32061138..22:32150875-32154575	GM12878	blood:
2	22:32053085-32061138..22:32284948-32287956	Hela-S3	cervix:
3	chr22:31891360..31893218-chr22:32058204..32060412,2	MCF-7	breast:
4	chr22:32024493..32026910-chr22:32057985..32060151,2	K562	blood:
5	chr22:32058182..32059714-chr22:32339404..32341859,2	MCF-7	breast:
6	22:32053085-32061138..22:32347255-32351014	GM12878	blood:
7	chr22:32057033..32060064-chr22:32338919..32341534,3	MCF-7	breast:
8	chr22:32054689..32061174-chr22:32339137..32344183,9	K562	blood:
9	22:31936958-31958600..22:32053085-32061138	Hela-S3	cervix:
10	chr22:32056716..32060506-chr22:32341976..32344669,4	MCF-7	breast:
11	chr22:31974704..31977587-chr22:32057867..32059822,2	MCF-7	breast:
12	chr22:32055976..32060358-chr22:32339389..32343294,9	K562	blood:
13	chr22:32021921..32023710-chr22:32058064..32060097,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184708	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000238910	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000242251	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000227813	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10483160	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16989495	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16989498	0.80[EUR][1000 genomes]
rs16989528	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41282571	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41304673	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55735011	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57421726	0.80[EUR][1000 genomes]
rs58085726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61080919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61103434	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7286557	0.88[EUR][1000 genomes]
rs7287752	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7291674	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8136615	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs917207	0.80[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32058800-32061000	Weak transcription	Stomach Mucosa	stomach
2	chr22:32058800-32061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr22:32058800-32061600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr22:32058800-32062000	Weak transcription	Spleen	Spleen
5	chr22:32058800-32063400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr22:32058800-32072400	Weak transcription	Fetal Heart	heart
7	chr22:32059000-32059800	Enhancers	Placenta	Placenta
8	chr22:32059000-32060400	Weak transcription	HepG2	liver
9	chr22:32059000-32061200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr22:32059000-32061400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr22:32059000-32061400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr22:32059000-32061400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr22:32059000-32061400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr22:32059000-32061400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr22:32059000-32061400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr22:32059000-32061400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr22:32059000-32061400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr22:32059000-32061400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr22:32059000-32061400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr22:32059000-32061400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr22:32059000-32061400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr22:32059000-32061400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr22:32059000-32061400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr22:32059000-32061400	Weak transcription	K562	blood
25	chr22:32059000-32061400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr22:32059000-32061600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr22:32059000-32061600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr22:32059000-32061600	Weak transcription	A549	lung
29	chr22:32059000-32061600	Weak transcription	Dnd41	blood
30	chr22:32059000-32063800	Weak transcription	HMEC	breast
31	chr22:32059000-32066600	Weak transcription	Hela-S3	cervix
32	chr22:32059000-32067000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr22:32059000-32070000	Weak transcription	Primary B cells from cord blood	blood
34	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr22:32059000-32072400	Weak transcription	Rectal Mucosa Donor 31	rectum

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