Variant report
| Variant | rs10484167 |
|---|---|
| Chromosome Location | chr14:97554597-97554598 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:97553286..97555382-chr14:97558626..97561527,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1016637 | 1.00[ASN][1000 genomes] |
| rs11627513 | 1.00[ASN][1000 genomes] |
| rs1385551 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs1683119 | 1.00[ASN][1000 genomes] |
| rs1683147 | 1.00[ASN][1000 genomes] |
| rs17191520 | 1.00[ASN][1000 genomes] |
| rs17686657 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs17689806 | 1.00[ASN][1000 genomes] |
| rs17761028 | 1.00[ASN][1000 genomes] |
| rs1884065 | 1.00[ASN][1000 genomes] |
| rs1950268 | 1.00[ASN][1000 genomes] |
| rs1950269 | 1.00[ASN][1000 genomes] |
| rs1955579 | 1.00[ASN][1000 genomes] |
| rs1955581 | 1.00[ASN][1000 genomes] |
| rs2017852 | 1.00[ASN][1000 genomes] |
| rs5008068 | 1.00[ASN][1000 genomes] |
| rs61981058 | 1.00[ASN][1000 genomes] |
| rs710263 | 1.00[ASN][1000 genomes] |
| rs7147186 | 1.00[ASN][1000 genomes] |
| rs7154859 | 1.00[ASN][1000 genomes] |
| rs8018103 | 1.00[ASN][1000 genomes] |
| rs856245 | 1.00[ASN][1000 genomes] |
| rs856248 | 1.00[ASN][1000 genomes] |
| rs856268 | 1.00[ASN][1000 genomes] |
| rs957995 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044202 | chr14:97155291-97683983 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv542179 | chr14:97155291-97683983 | Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv948620 | chr14:97334444-98133191 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv1048462 | chr14:97421360-97804598 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:97551800-97559200 | Weak transcription | Right Atrium | heart |
| 2 | chr14:97554000-97558800 | Weak transcription | Brain Germinal Matrix | brain |
