Variant report

Variant	rs1884065
Chromosome Location	chr14:97488362-97488363
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97477675..97482203-chr14:97483753..97489139,4	K562	blood:
2	chr14:97488059..97488750-chr22:38172987..38173806,2	HCT-116	colon:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1016637	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484167	1.00[ASN][1000 genomes]
rs11627513	1.00[ASN][1000 genomes]
rs1385551	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1683119	1.00[ASN][1000 genomes]
rs1683147	1.00[ASN][1000 genomes]
rs17191520	1.00[ASN][1000 genomes]
rs17686657	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17689806	1.00[ASN][1000 genomes]
rs17761028	1.00[ASN][1000 genomes]
rs1950268	1.00[ASN][1000 genomes]
rs1950269	1.00[ASN][1000 genomes]
rs1955579	1.00[ASN][1000 genomes]
rs1955581	1.00[ASN][1000 genomes]
rs2017852	1.00[ASN][1000 genomes]
rs5008068	1.00[ASN][1000 genomes]
rs61981058	1.00[ASN][1000 genomes]
rs710263	1.00[ASN][1000 genomes]
rs7147186	1.00[ASN][1000 genomes]
rs7154859	1.00[ASN][1000 genomes]
rs8013300	1.00[CHB][hapmap]
rs8018103	1.00[ASN][1000 genomes]
rs856245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856248	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856268	1.00[ASN][1000 genomes]
rs957995	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1048462	chr14:97421360-97804598	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1884065	C14orf142	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97487200-97488400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr14:97487200-97488400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:97487200-97488400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:97488000-97488400	Enhancers	Brain Anterior Caudate	brain
5	chr14:97488200-97488400	Flanking Active TSS	K562	blood
6	chr14:97488200-97489200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:97488200-97489200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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