Variant report

Variant	rs856248
Chromosome Location	chr14:97492459-97492460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1016637	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484167	1.00[ASN][1000 genomes]
rs11627513	1.00[ASN][1000 genomes]
rs1385551	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1683119	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1683147	1.00[ASN][1000 genomes]
rs17191520	1.00[ASN][1000 genomes]
rs17686657	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17689806	1.00[ASN][1000 genomes]
rs17761028	1.00[ASN][1000 genomes]
rs1884065	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950268	1.00[ASN][1000 genomes]
rs1950269	1.00[ASN][1000 genomes]
rs1955579	1.00[ASN][1000 genomes]
rs1955581	1.00[ASN][1000 genomes]
rs2017852	1.00[ASN][1000 genomes]
rs5008068	1.00[ASN][1000 genomes]
rs61981058	1.00[ASN][1000 genomes]
rs710263	1.00[ASN][1000 genomes]
rs7147186	1.00[ASN][1000 genomes]
rs7154859	1.00[ASN][1000 genomes]
rs8013300	1.00[CHB][hapmap]
rs8018103	1.00[ASN][1000 genomes]
rs856245	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856268	1.00[ASN][1000 genomes]
rs957995	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1048462	chr14:97421360-97804598	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97489200-97494600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr14:97489400-97494000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:97489600-97495200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr14:97490000-97495200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:97490600-97495200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:97491400-97492600	Enhancers	Fetal Brain Male	brain
7	chr14:97491600-97492800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:97491600-97494600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:97491800-97492600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr14:97491800-97492600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr14:97491800-97492600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr14:97491800-97492800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:97491800-97492800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr14:97491800-97492800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr14:97491800-97492800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
16	chr14:97491800-97494800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:97492200-97493000	Enhancers	Brain Germinal Matrix	brain
18	chr14:97492200-97493400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr14:97492200-97494400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:97492400-97492600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr14:97492400-97493000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr14:97492400-97494800	Weak transcription	Fetal Brain Female	brain

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