Variant report

Variant	rs10487164
Chromosome Location	chr7:103321872-103321873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103320659..103322391-chr7:103324017..103325552,2	K562	blood:
2	chr7:103319857..103322133-chr7:103324441..103326185,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1012064	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12705140	0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs12705141	0.91[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs1860686	0.91[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299338	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2299348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299370	0.92[ASN][1000 genomes]
rs362628	0.84[ASN][1000 genomes]
rs362631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs362672	0.84[ASN][1000 genomes]
rs41276151	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs476848	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs493189	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs517912	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs540058	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs563264	0.80[CEU][hapmap]
rs56384750	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs568519	0.89[EUR][1000 genomes]
rs631989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs67423770	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67811550	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67823578	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs720078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73177965	0.84[ASN][1000 genomes]
rs73177970	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs82878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs997447	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv933934	chr7:103301959-103322483	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933167	chr7:103312181-103322483	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103319600-103323200	Enhancers	Hela-S3	cervix
2	chr7:103319800-103322200	Enhancers	HepG2	liver
3	chr7:103321400-103329800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:103321800-103323000	Weak transcription	Osteobl	bone
5	chr7:103321800-103330800	Weak transcription	K562	blood

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