Variant report

Variant	rs476848
Chromosome Location	chr7:103365428-103365429
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103357438..103359358-chr7:103364069..103366186,2	K562	blood:
2	chr7:103364749..103367495-chr7:103619715..103622502,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10487164	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12705141	0.91[CEU][hapmap]
rs1860686	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs2299348	1.00[CEU][hapmap]
rs2299370	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3819450	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471360	0.83[CEU][hapmap]
rs476736	0.81[CEU][hapmap]
rs487708	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491170	0.83[CEU][hapmap]
rs491921	0.83[CEU][hapmap]
rs493189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496801	0.83[CEU][hapmap]
rs497536	0.81[CEU][hapmap]
rs517912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549743	0.83[CEU][hapmap]
rs563264	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588423	0.83[CEU][hapmap]
rs631989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636187	0.82[CEU][hapmap]
rs638355	0.81[CEU][hapmap]
rs651488	0.83[CEU][hapmap]
rs665251	0.81[CEU][hapmap]
rs67423770	0.87[EUR][1000 genomes]
rs67811550	0.87[EUR][1000 genomes]
rs67823578	0.87[EUR][1000 genomes]
rs682018	0.89[CEU][hapmap]
rs683360	0.83[CEU][hapmap]
rs720078	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs73177970	0.85[EUR][1000 genomes]
rs73177988	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177989	1.00[ASN][1000 genomes]
rs73178001	1.00[ASN][1000 genomes]
rs73712212	1.00[ASN][1000 genomes]
rs997447	1.00[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103355400-103374800	Weak transcription	HepG2	liver
2	chr7:103364800-103369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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