Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:103262757..103265718-chr7:103587401..103589902,2	K562	blood:
2	chr7:103265123..103267515-chr7:103269219..103272108,3	K562	blood:
3	chr7:103253050..103254714-chr7:103265200..103267338,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10487164	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12705141	0.91[CEU][hapmap]
rs1860686	0.91[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2299348	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs362631	0.84[GIH][hapmap];0.82[LWK][hapmap]
rs41276151	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs476848	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs493189	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs517912	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs540058	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs563264	0.80[CEU][hapmap]
rs56384750	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs568519	0.80[EUR][1000 genomes]
rs631989	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs67423770	0.94[EUR][1000 genomes]
rs67811550	0.94[EUR][1000 genomes]
rs67823578	0.94[EUR][1000 genomes]
rs720078	1.00[CEU][hapmap];0.94[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73177970	0.89[EUR][1000 genomes]
rs82878	0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103256200-103269000	Weak transcription	K562	blood
2	chr7:103256800-103265600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:103260200-103267000	Weak transcription	HepG2	liver

Quick Search: