Variant report

Variant	rs73177970
Chromosome Location	chr7:103321668-103321669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10487164	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1860686	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2299348	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41276151	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs476848	0.85[EUR][1000 genomes]
rs493189	0.85[EUR][1000 genomes]
rs517912	0.85[EUR][1000 genomes]
rs540058	0.85[EUR][1000 genomes]
rs56384750	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs568519	0.85[EUR][1000 genomes]
rs631989	0.85[EUR][1000 genomes]
rs67423770	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67811550	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67823578	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs720078	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs997447	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv933934	chr7:103301959-103322483	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933167	chr7:103312181-103322483	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103319400-103321800	Enhancers	Osteobl	bone
2	chr7:103319600-103323200	Enhancers	Hela-S3	cervix
3	chr7:103319800-103322200	Enhancers	HepG2	liver
4	chr7:103320600-103321800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:103320800-103321800	Enhancers	K562	blood
6	chr7:103321400-103329800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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