Variant report

Variant	rs10488
Chromosome Location	chr11:102668022-102668023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17881293	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17884081	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs470130	0.85[YRI][hapmap]
rs488178	0.89[AFR][1000 genomes]
rs5031036	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57842473	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61595211	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73589535	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102655600-102668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:102662200-102668400	Weak transcription	NHLF	lung
3	chr11:102663000-102668600	Weak transcription	NHEK	skin
4	chr11:102664200-102668800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:102665200-102669400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:102665400-102668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:102665400-102668400	Weak transcription	HMEC	breast
8	chr11:102665400-102672000	Weak transcription	Fetal Stomach	stomach
9	chr11:102667400-102668600	Active TSS	HUVEC	blood vessel
10	chr11:102667600-102668200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:102667600-102671200	Enhancers	Fetal Intestine Small	intestine
12	chr11:102667800-102668400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:102667800-102671000	Enhancers	Stomach Mucosa	stomach
14	chr11:102668000-102668200	Enhancers	Small Intestine	intestine
15	chr11:102668000-102668200	Flanking Active TSS	NHDF-Ad	bronchial
16	chr11:102668000-102670000	Enhancers	Lung	lung
17	chr11:102668000-102670400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:102668000-102670800	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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