Variant report

Variant	rs57842473
Chromosome Location	chr11:102656719-102656720
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10488	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17860946	1.00[ASN][1000 genomes]
rs17880109	1.00[ASN][1000 genomes]
rs17881293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17884081	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470130	0.93[AFR][1000 genomes]
rs470231	0.91[AFR][1000 genomes]
rs470504	0.93[AFR][1000 genomes]
rs5031036	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61595211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73589535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102651600-102667600	Weak transcription	NHDF-Ad	bronchial
2	chr11:102652000-102656800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:102652000-102661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:102652000-102661200	Weak transcription	NHLF	lung
5	chr11:102652600-102656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:102655000-102657200	Weak transcription	Stomach Mucosa	stomach
7	chr11:102655200-102660600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:102655600-102659000	Weak transcription	NHEK	skin
9	chr11:102655600-102668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:102656600-102657400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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