Variant report

Variant	rs10488670
Chromosome Location	chr13:30874175-30874176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30873008..30875722-chr13:30880790..30883430,2	K562	blood:
2	chr13:30872669..30876124-chr13:30878338..30881739,3	MCF-7	breast:
3	chr13:30869127..30871838-chr13:30872308..30874862,2	K562	blood:

Variant related genes	Relation type
ENSG00000215049	Chromatin interaction
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10492464	1.00[CEU][hapmap]
rs1054438	0.84[TSI][hapmap]
rs12429252	1.00[CEU][hapmap]
rs12584523	1.00[CEU][hapmap]
rs17074504	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17633138	1.00[CEU][hapmap]
rs17633357	1.00[CEU][hapmap]
rs17689746	1.00[CEU][hapmap]
rs58215017	0.87[ASN][1000 genomes]
rs614986	1.00[CEU][hapmap]
rs7322430	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7336250	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs739501	1.00[CEU][hapmap]
rs766994	1.00[CEU][hapmap]
rs7983319	0.87[AFR][1000 genomes]
rs7990931	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30843000-30880200	Weak transcription	Fetal Stomach	stomach
2	chr13:30847200-30876000	Weak transcription	Lung	lung
3	chr13:30851800-30874200	Weak transcription	HUVEC	blood vessel
4	chr13:30854000-30876800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:30855200-30877200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr13:30856000-30877400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:30856800-30874600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:30859800-30875600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr13:30859800-30879600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr13:30861000-30880800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:30861200-30878200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:30864000-30878200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:30864400-30875600	Weak transcription	NHEK	skin
14	chr13:30864400-30879000	Weak transcription	Colon Smooth Muscle	Colon
15	chr13:30864400-30879800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:30865200-30879200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr13:30866800-30880800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr13:30867000-30877200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr13:30867000-30877400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr13:30867200-30877200	Weak transcription	HepG2	liver
21	chr13:30868400-30880800	Weak transcription	Left Ventricle	heart
22	chr13:30868800-30874200	Weak transcription	Fetal Heart	heart
23	chr13:30868800-30876000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr13:30869000-30874200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:30869000-30877400	Weak transcription	Fetal Thymus	thymus
26	chr13:30869000-30878000	Weak transcription	K562	blood
27	chr13:30869400-30878800	Weak transcription	Brain Anterior Caudate	brain
28	chr13:30869600-30874200	Weak transcription	Fetal Brain Female	brain
29	chr13:30869600-30876800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr13:30869600-30879400	Weak transcription	Brain Substantia Nigra	brain
31	chr13:30869800-30875600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr13:30870800-30880400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr13:30871000-30875400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr13:30871000-30878000	Weak transcription	Thymus	Thymus
35	chr13:30871000-30880400	Weak transcription	Fetal Intestine Small	intestine
36	chr13:30871000-30880400	Weak transcription	Right Ventricle	heart
37	chr13:30871200-30876000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr13:30872400-30876000	Weak transcription	Primary B cells from cord blood	blood
39	chr13:30873600-30878200	Enhancers	Osteobl	bone
40	chr13:30873800-30874200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr13:30873800-30875000	Enhancers	HSMM	muscle
42	chr13:30873800-30875400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr13:30873800-30876000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr13:30873800-30876400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr13:30873800-30876600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr13:30873800-30877000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr13:30873800-30877000	Enhancers	NH-A	brain
48	chr13:30873800-30878200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr13:30873800-30878200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr13:30873800-30878800	Enhancers	NHLF	lung

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