Variant report

Variant	rs614986
Chromosome Location	chr13:30894735-30894736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10488670	1.00[CEU][hapmap]
rs10492464	1.00[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11147417	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11147418	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12429252	1.00[CEU][hapmap]
rs12584523	1.00[CEU][hapmap]
rs17074504	1.00[CEU][hapmap]
rs17633138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17633357	1.00[CEU][hapmap]
rs17689690	0.85[AMR][1000 genomes]
rs17689746	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55843043	0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56232780	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57190526	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58933801	0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61948026	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs739501	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs766994	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9550551	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9550554	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9550556	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9550558	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9551891	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9551892	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:30882200-30896200	Weak transcription	Ovary	ovary
3	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
5	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
6	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
8	chr13:30886000-30898400	Weak transcription	Lung	lung
9	chr13:30886800-30896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
12	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
13	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
15	chr13:30889600-30898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr13:30892000-30894800	Enhancers	Brain Anterior Caudate	brain
18	chr13:30892000-30895200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr13:30892000-30895800	Enhancers	Brain Cingulate Gyrus	brain
20	chr13:30892200-30895000	Enhancers	Brain Substantia Nigra	brain
21	chr13:30892200-30895200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:30892400-30894800	Enhancers	Colon Smooth Muscle	Colon
23	chr13:30892400-30896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:30892800-30896800	Weak transcription	Left Ventricle	heart
25	chr13:30892800-30897800	Weak transcription	Right Atrium	heart
26	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
27	chr13:30893400-30895200	Enhancers	Brain Angular Gyrus	brain
28	chr13:30894000-30894800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr13:30894200-30896800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:30894200-30897400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:30894200-30897400	Weak transcription	NHLF	lung
32	chr13:30894200-30897800	Weak transcription	Fetal Muscle Leg	muscle
33	chr13:30894200-30900200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr13:30894400-30895000	Weak transcription	HSMMtube	muscle
36	chr13:30894400-30896000	Enhancers	Fetal Intestine Large	intestine
37	chr13:30894600-30894800	ZNF genes & repeats	Aorta	Aorta
38	chr13:30894600-30897600	Weak transcription	Brain Hippocampus Middle	brain

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