Variant report

Variant	rs9551891
Chromosome Location	chr13:30892776-30892777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10492464	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11147417	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11147418	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17633138	0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17689690	0.88[AMR][1000 genomes]
rs17689746	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55843043	0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56232780	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57190526	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58933801	0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs614986	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61948026	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs739501	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs766994	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9550551	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9550554	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9550556	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9550558	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9551892	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:30882200-30896200	Weak transcription	Ovary	ovary
4	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
6	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
7	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
9	chr13:30885000-30894600	Weak transcription	Aorta	Aorta
10	chr13:30886000-30898400	Weak transcription	Lung	lung
11	chr13:30886800-30896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:30887600-30893200	Weak transcription	NHDF-Ad	bronchial
14	chr13:30887600-30893400	Weak transcription	Brain Angular Gyrus	brain
15	chr13:30888000-30894000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
17	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
18	chr13:30888200-30893800	Weak transcription	HSMMtube	muscle
19	chr13:30889000-30893800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr13:30889200-30893400	Weak transcription	NHLF	lung
21	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
23	chr13:30889600-30898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr13:30890200-30892800	Enhancers	Left Ventricle	heart
26	chr13:30890800-30894000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr13:30891800-30892800	Enhancers	Liver	Liver
28	chr13:30892000-30892800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:30892000-30893400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr13:30892000-30893400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr13:30892000-30893400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:30892000-30893800	Enhancers	Brain Hippocampus Middle	brain
33	chr13:30892000-30894200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:30892000-30894200	Enhancers	Adipose Nuclei	Adipose
35	chr13:30892000-30894200	Enhancers	Fetal Muscle Leg	muscle
36	chr13:30892000-30894400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:30892000-30894400	Enhancers	Rectal Smooth Muscle	rectum
38	chr13:30892000-30894800	Enhancers	Brain Anterior Caudate	brain
39	chr13:30892000-30895200	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr13:30892000-30895800	Enhancers	Brain Cingulate Gyrus	brain
41	chr13:30892200-30892800	Enhancers	Psoas Muscle	Psoas
42	chr13:30892200-30892800	Enhancers	Right Atrium	heart
43	chr13:30892200-30893800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr13:30892200-30895000	Enhancers	Brain Substantia Nigra	brain
45	chr13:30892200-30895200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr13:30892400-30893200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr13:30892400-30894200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr13:30892400-30894800	Enhancers	Colon Smooth Muscle	Colon
49	chr13:30892400-30896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr13:30892600-30893800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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