Variant report

Variant	rs58933801
Chromosome Location	chr13:30886651-30886652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30885681..30887729-chr13:30893149..30895566,2	K562	blood:
2	chr13:30878723..30884002-chr13:30884417..30889770,9	K562	blood:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction
ENSG00000236463	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10492464	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11147417	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11147418	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17633138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17689690	0.87[AMR][1000 genomes]
rs17689746	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55843043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56232780	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57190526	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs614986	0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61948026	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs739501	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs766994	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9550551	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9550554	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9550556	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9550558	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9551891	0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9551892	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882000-30889000	Weak transcription	Spleen	Spleen
2	chr13:30882200-30887400	Weak transcription	Primary T cells from cord blood	blood
3	chr13:30882200-30889200	Weak transcription	Left Ventricle	heart
4	chr13:30882200-30889600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:30882200-30892200	Weak transcription	Psoas Muscle	Psoas
6	chr13:30882200-30893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr13:30882200-30896200	Weak transcription	Ovary	ovary
9	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr13:30882400-30886800	Weak transcription	Liver	Liver
11	chr13:30882400-30887000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr13:30882400-30887000	Weak transcription	Brain Hippocampus Middle	brain
13	chr13:30882400-30887200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:30882400-30887200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:30882400-30887400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:30882400-30887400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr13:30882400-30887400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr13:30882400-30887600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr13:30882400-30892000	Weak transcription	Fetal Muscle Leg	muscle
20	chr13:30882400-30892200	Weak transcription	Right Atrium	heart
21	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
22	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
23	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr13:30882600-30887000	Weak transcription	Adipose Nuclei	Adipose
25	chr13:30882800-30886800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr13:30882800-30887000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr13:30883000-30887000	Weak transcription	Brain Angular Gyrus	brain
28	chr13:30883000-30887200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr13:30883000-30887200	Weak transcription	Brain Substantia Nigra	brain
30	chr13:30883000-30887400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr13:30883000-30889000	Weak transcription	Brain Anterior Caudate	brain
32	chr13:30883000-30889400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr13:30883000-30890400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr13:30883200-30886800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr13:30883200-30886800	Weak transcription	Osteobl	bone
36	chr13:30883200-30887000	Weak transcription	A549	lung
37	chr13:30883200-30888000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr13:30883400-30887000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr13:30883400-30887400	Weak transcription	GM12878-XiMat	blood
40	chr13:30883400-30887600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr13:30884000-30888000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr13:30884400-30887000	Weak transcription	Primary B cells from cord blood	blood
43	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
44	chr13:30885000-30894600	Weak transcription	Aorta	Aorta
45	chr13:30885600-30888200	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr13:30885800-30886800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:30885800-30886800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr13:30885800-30887400	Enhancers	HMEC	breast
49	chr13:30885800-30887800	Enhancers	Fetal Lung	lung
50	chr13:30885800-30888000	Enhancers	Thymus	Thymus

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