Variant report

Variant	rs9551892
Chromosome Location	chr13:30897489-30897490
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30880917..30883470-chr13:30895639..30898288,2	K562	blood:
2	chr13:30897317..30899409-chr13:30902997..30905720,2	K562	blood:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10492464	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11147417	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11147418	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17633138	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17689690	0.82[AMR][1000 genomes]
rs17689746	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55843043	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56232780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57190526	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58933801	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs614986	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61948026	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs739501	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs766994	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9550551	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9550554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9550556	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9550558	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9551891	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
3	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:30886000-30898400	Weak transcription	Lung	lung
5	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
7	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
8	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
10	chr13:30889600-30898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:30892800-30897800	Weak transcription	Right Atrium	heart
13	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
14	chr13:30894200-30897800	Weak transcription	Fetal Muscle Leg	muscle
15	chr13:30894200-30900200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr13:30894600-30897600	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:30894800-30905400	Weak transcription	Brain Anterior Caudate	brain
19	chr13:30895800-30898000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr13:30896000-30899600	Weak transcription	Fetal Heart	heart
21	chr13:30896800-30898000	Enhancers	K562	blood
22	chr13:30896800-30898200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:30897200-30905600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:30897400-30898000	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links