Variant report

Variant	rs57190526
Chromosome Location	chr13:30908794-30908795
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30830170..30831527-chr13:30908713..30909751,4	MCF-7	breast:
2	chr13:30905394..30908859-chr13:30911466..30914534,3	MCF-7	breast:
3	chr13:30883453..30886159-chr13:30906856..30910683,3	K562	blood:
4	chr13:30706898..30707420-chr13:30908752..30909540,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10492464	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11147417	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11147418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12429252	0.82[AMR][1000 genomes]
rs17633138	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17689746	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55843043	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56232780	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58933801	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs614986	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61948026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs739501	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs766994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9550551	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9550554	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9550556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9550558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9551891	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9551892	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
3	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
4	chr13:30903600-30914000	Weak transcription	Aorta	Aorta
5	chr13:30903800-30912000	Weak transcription	NHDF-Ad	bronchial
6	chr13:30904400-30909400	Weak transcription	Fetal Thymus	thymus
7	chr13:30905800-30909000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:30905800-30909000	Weak transcription	Brain Angular Gyrus	brain
9	chr13:30905800-30909200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr13:30905800-30913600	Weak transcription	Fetal Stomach	stomach
11	chr13:30905800-30913600	Weak transcription	Right Atrium	heart
12	chr13:30905800-30913600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr13:30905800-30914000	Weak transcription	Fetal Lung	lung
14	chr13:30905800-30914000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr13:30906000-30909200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr13:30906400-30909200	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:30906400-30909200	Weak transcription	Brain Substantia Nigra	brain
18	chr13:30906600-30909000	Weak transcription	Adipose Nuclei	Adipose
19	chr13:30906600-30909000	Weak transcription	Brain Anterior Caudate	brain
20	chr13:30906600-30912000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:30906600-30913800	Weak transcription	Right Ventricle	heart
22	chr13:30906800-30910600	Weak transcription	Hela-S3	cervix
23	chr13:30906800-30912000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:30907000-30909200	Weak transcription	Dnd41	blood
25	chr13:30907000-30911800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr13:30907000-30913800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr13:30907200-30912000	Weak transcription	Fetal Heart	heart
28	chr13:30907400-30914000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr13:30907800-30911400	Weak transcription	Colon Smooth Muscle	Colon
30	chr13:30908000-30914000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:30908200-30909400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr13:30908400-30908800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr13:30908400-30908800	Enhancers	Liver	Liver
34	chr13:30908400-30910600	Weak transcription	Primary B cells from cord blood	blood
35	chr13:30908600-30909000	Enhancers	Pancreatic Islets	Pancreatic Islet

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