Variant report

Variant	rs10492464
Chromosome Location	chr13:30878044-30878045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30876062..30879070-chr13:30879667..30883104,4	K562	blood:
2	chr13:30874205..30876295-chr13:30876523..30878862,2	K562	blood:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10488670	1.00[CEU][hapmap]
rs11147418	0.80[AMR][1000 genomes]
rs12429252	1.00[CEU][hapmap]
rs12584523	1.00[CEU][hapmap]
rs17633138	1.00[CEU][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17633357	1.00[CEU][hapmap]
rs17689746	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs55843043	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56232780	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57190526	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs58933801	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs614986	1.00[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61948026	0.80[AMR][1000 genomes]
rs739501	1.00[CEU][hapmap]
rs766994	1.00[CEU][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes]
rs9550551	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9550554	0.84[AMR][1000 genomes]
rs9550556	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9550558	0.80[AMR][1000 genomes]
rs9551891	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9551892	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30843000-30880200	Weak transcription	Fetal Stomach	stomach
2	chr13:30859800-30879600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:30861000-30880800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:30861200-30878200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr13:30864000-30878200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:30864400-30879000	Weak transcription	Colon Smooth Muscle	Colon
7	chr13:30864400-30879800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:30865200-30879200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr13:30866800-30880800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr13:30868400-30880800	Weak transcription	Left Ventricle	heart
11	chr13:30869400-30878800	Weak transcription	Brain Anterior Caudate	brain
12	chr13:30869600-30879400	Weak transcription	Brain Substantia Nigra	brain
13	chr13:30870800-30880400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr13:30871000-30880400	Weak transcription	Fetal Intestine Small	intestine
15	chr13:30871000-30880400	Weak transcription	Right Ventricle	heart
16	chr13:30873600-30878200	Enhancers	Osteobl	bone
17	chr13:30873800-30878200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:30873800-30878200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr13:30873800-30878800	Enhancers	NHLF	lung
20	chr13:30873800-30879200	Enhancers	NHDF-Ad	bronchial
21	chr13:30873800-30879400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:30873800-30879600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:30874800-30878200	Weak transcription	Fetal Brain Female	brain
24	chr13:30875000-30879400	Weak transcription	HSMM	muscle
25	chr13:30876000-30880600	Enhancers	Fetal Brain Male	brain
26	chr13:30876200-30880400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:30876200-30880600	Weak transcription	Ovary	ovary
28	chr13:30876400-30878400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr13:30876400-30879000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr13:30876400-30879000	Weak transcription	HMEC	breast
31	chr13:30876400-30879600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr13:30876400-30879600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:30876400-30879600	Weak transcription	Psoas Muscle	Psoas
34	chr13:30876400-30880800	Weak transcription	Lung	lung
35	chr13:30876600-30880600	Enhancers	Fetal Heart	heart
36	chr13:30876800-30878200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:30876800-30880200	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr13:30877000-30879200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr13:30877000-30879200	Weak transcription	NH-A	brain
40	chr13:30877000-30879400	Weak transcription	Fetal Lung	lung
41	chr13:30877000-30879400	Weak transcription	NHEK	skin
42	chr13:30877000-30880600	Enhancers	Primary B cells from cord blood	blood
43	chr13:30877200-30878200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr13:30877200-30878200	Enhancers	A549	lung
45	chr13:30877200-30880400	Enhancers	HepG2	liver
46	chr13:30877200-30880600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr13:30877400-30878400	Flanking Active TSS	GM12878-XiMat	blood
48	chr13:30877400-30879400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr13:30877400-30879400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr13:30877400-30879600	Enhancers	Adipose Nuclei	Adipose

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