Variant report

Variant	rs55843043
Chromosome Location	chr13:30889136-30889137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30888078..30890627-chr13:31190542..31192551,3	MCF-7	breast:
2	chr13:30878723..30884002-chr13:30884417..30889770,9	K562	blood:
3	chr13:30874478..30877228-chr13:30887238..30890172,2	K562	blood:
4	chr13:30884908..30886563-chr13:30886759..30889976,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132952	Chromatin interaction
ENSG00000189403	Chromatin interaction
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10492464	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11147417	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11147418	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17633138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17689690	0.87[AMR][1000 genomes]
rs17689746	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56232780	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57190526	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58933801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614986	0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61948026	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs739501	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs766994	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9550551	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9550554	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9550556	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9550558	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9551891	0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9551892	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30889200	Weak transcription	Left Ventricle	heart
2	chr13:30882200-30889600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:30882200-30892200	Weak transcription	Psoas Muscle	Psoas
4	chr13:30882200-30893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr13:30882200-30896200	Weak transcription	Ovary	ovary
7	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr13:30882400-30892000	Weak transcription	Fetal Muscle Leg	muscle
9	chr13:30882400-30892200	Weak transcription	Right Atrium	heart
10	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
11	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
12	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr13:30883000-30889400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:30883000-30890400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
16	chr13:30885000-30894600	Weak transcription	Aorta	Aorta
17	chr13:30885800-30889800	Enhancers	Primary B cells from peripheral blood	blood
18	chr13:30885800-30889800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr13:30886000-30898400	Weak transcription	Lung	lung
20	chr13:30886200-30889200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:30886200-30892000	Weak transcription	Dnd41	blood
22	chr13:30886400-30889200	Enhancers	NHLF	lung
23	chr13:30886800-30896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:30887000-30889400	Enhancers	Primary B cells from cord blood	blood
26	chr13:30887000-30889600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr13:30887200-30889800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr13:30887400-30889200	Enhancers	Primary T cells from cord blood	blood
29	chr13:30887400-30889600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr13:30887400-30889600	Enhancers	GM12878-XiMat	blood
31	chr13:30887600-30889200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr13:30887600-30889800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr13:30887600-30890400	Weak transcription	Liver	Liver
34	chr13:30887600-30890400	Weak transcription	Brain Substantia Nigra	brain
35	chr13:30887600-30892600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr13:30887600-30893200	Weak transcription	NHDF-Ad	bronchial
37	chr13:30887600-30893400	Weak transcription	Brain Angular Gyrus	brain
38	chr13:30887800-30891400	Weak transcription	Fetal Stomach	stomach
39	chr13:30887800-30892000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr13:30887800-30892000	Weak transcription	Adipose Nuclei	Adipose
41	chr13:30887800-30892000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr13:30887800-30892400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr13:30888000-30889600	Enhancers	Primary hematopoietic stem cells	blood
44	chr13:30888000-30889600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr13:30888000-30890400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr13:30888000-30890600	Weak transcription	Colon Smooth Muscle	Colon
47	chr13:30888000-30892000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr13:30888000-30892000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr13:30888000-30894000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus

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