Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10518601	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11162640	0.93[EUR][1000 genomes]
rs11162643	0.95[EUR][1000 genomes]
rs11802284	0.95[EUR][1000 genomes]
rs12026668	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12035683	0.96[EUR][1000 genomes]
rs17098510	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17102803	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102806	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102814	0.96[EUR][1000 genomes]
rs17102821	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17102835	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs228452	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228453	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228454	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228455	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228566	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6661075	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6690752	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7548556	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7555043	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9727623	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79649600-79654000	Active TSS	Adipose Nuclei	Adipose
2	chr1:79652400-79655600	Enhancers	Hela-S3	cervix
3	chr1:79653400-79654000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
4	chr1:79653400-79654200	Flanking Active TSS	HUVEC	blood vessel
5	chr1:79653400-79654400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:79653600-79654200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:79653600-79655600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:79653800-79654600	Enhancers	NH-A	brain

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