Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10489654	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10518601	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11162640	0.93[EUR][1000 genomes]
rs11162643	0.95[EUR][1000 genomes]
rs11802284	0.95[EUR][1000 genomes]
rs12026668	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12035683	0.96[EUR][1000 genomes]
rs17098510	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17102803	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102806	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102814	0.96[EUR][1000 genomes]
rs17102821	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17102835	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs228452	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228453	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228454	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228455	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228566	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661075	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6690752	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7548556	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9727623	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79654200-79659000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:79654400-79658800	Weak transcription	GM12878-XiMat	blood
3	chr1:79654400-79658800	Weak transcription	HMEC	breast
4	chr1:79654400-79659000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:79654600-79658800	Weak transcription	NH-A	brain
6	chr1:79654600-79658800	Weak transcription	Osteobl	bone
7	chr1:79654800-79658800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:79655600-79657800	Weak transcription	HUVEC	blood vessel
9	chr1:79655600-79658000	Weak transcription	Hela-S3	cervix
10	chr1:79655600-79658800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:79656800-79658200	Weak transcription	Thymus	Thymus
12	chr1:79656800-79658600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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