Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:79616451..79619205-chr1:79639296..79641396,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10489654	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10518601	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162640	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162643	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802284	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026668	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12035683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098510	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17102803	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17102806	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17102814	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102821	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102835	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228452	0.95[EUR][1000 genomes]
rs228453	0.95[EUR][1000 genomes]
rs228454	0.92[EUR][1000 genomes]
rs228455	0.95[EUR][1000 genomes]
rs228566	0.95[EUR][1000 genomes]
rs6661075	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690752	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7555043	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9727623	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1007013	chr1:79540957-79619725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1005743	chr1:79540957-79621702	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79616400-79617600	Enhancers	HUVEC	blood vessel
2	chr1:79616800-79617600	Enhancers	Fetal Stomach	stomach
3	chr1:79617000-79618800	Weak transcription	Fetal Lung	lung
4	chr1:79617400-79617600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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