Variant report

Variant	rs10493477
Chromosome Location	chr1:71134705-71134706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17131389	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131391	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131397	1.00[ASN][1000 genomes]
rs17131398	1.00[ASN][1000 genomes]
rs17131404	1.00[ASN][1000 genomes]
rs17131405	1.00[ASN][1000 genomes]
rs17131406	1.00[ASN][1000 genomes]
rs17131408	1.00[ASN][1000 genomes]
rs17131409	1.00[ASN][1000 genomes]
rs17131415	1.00[ASN][1000 genomes]
rs17536833	1.00[ASN][1000 genomes]
rs1932054	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932055	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932056	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344268	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61635159	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926249	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926251	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926259	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926263	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951353	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71132400-71137600	Weak transcription	Fetal Lung	lung
2	chr1:71132800-71136800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:71132800-71141000	Weak transcription	Gastric	stomach
4	chr1:71133400-71136400	Weak transcription	K562	blood
5	chr1:71133800-71137600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:71133800-71138600	Weak transcription	Aorta	Aorta
7	chr1:71134000-71140600	Weak transcription	Pancreas	Pancrea
8	chr1:71134400-71136400	Weak transcription	Fetal Stomach	stomach
9	chr1:71134600-71135800	Weak transcription	Fetal Heart	heart

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