Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:71131135..71133902-chr1:71140118..71142284,2	K562	blood:
2	chr1:71139654..71142192-chr1:71144510..71147443,2	MCF-7	breast:
3	chr1:71140625..71143147-chr1:71147219..71151401,4	K562	blood:
4	chr1:71139809..71142590-chr1:71513361..71515256,2	K562	blood:

Variant related genes	Relation type
ENSG00000050628	Chromatin interaction
ENSG00000235079	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493477	1.00[ASN][1000 genomes]
rs17131389	1.00[ASN][1000 genomes]
rs17131391	1.00[ASN][1000 genomes]
rs17131398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131404	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131415	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17536833	1.00[ASN][1000 genomes]
rs1932054	1.00[ASN][1000 genomes]
rs1932055	1.00[ASN][1000 genomes]
rs1932056	1.00[ASN][1000 genomes]
rs4344268	1.00[ASN][1000 genomes]
rs61635159	1.00[ASN][1000 genomes]
rs72926249	1.00[ASN][1000 genomes]
rs72926251	1.00[ASN][1000 genomes]
rs72926259	1.00[ASN][1000 genomes]
rs72926263	1.00[ASN][1000 genomes]
rs951353	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv517877	chr1:71137936-71142202	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv523991	chr1:71142168-71142202	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv526237	chr1:71142168-71145822	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71139000-71145400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:71139400-71143200	Weak transcription	Ovary	ovary
3	chr1:71139800-71142400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:71140400-71142400	Flanking Active TSS	K562	blood
5	chr1:71140600-71143000	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:71140800-71142200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr1:71140800-71142200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:71140800-71142400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:71140800-71142400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:71141000-71142400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr1:71141600-71142400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:71141800-71142200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:71141800-71142400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:71141800-71142600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:71142000-71142200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:71142000-71142400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:71142000-71142400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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