Variant report
| Variant | rs17131415 |
|---|---|
| Chromosome Location | chr1:71154281-71154282 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:71153691..71155593-chr1:71164333..71165915,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10493477 | 1.00[ASN][1000 genomes] |
| rs12059208 | 0.86[JPT][hapmap] |
| rs17131389 | 1.00[ASN][1000 genomes] |
| rs17131391 | 1.00[ASN][1000 genomes] |
| rs17131397 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131398 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131404 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131405 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131406 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131408 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131409 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17536833 | 1.00[ASN][1000 genomes] |
| rs1932054 | 0.86[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1932055 | 1.00[ASN][1000 genomes] |
| rs1932056 | 1.00[ASN][1000 genomes] |
| rs4344268 | 1.00[ASN][1000 genomes] |
| rs61635159 | 1.00[ASN][1000 genomes] |
| rs72926249 | 1.00[ASN][1000 genomes] |
| rs72926251 | 1.00[ASN][1000 genomes] |
| rs72926259 | 1.00[ASN][1000 genomes] |
| rs72926263 | 1.00[ASN][1000 genomes] |
| rs951353 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv871024 | chr1:71088106-71169865 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:71154000-71154400 | Enhancers | Liver | Liver |
