Variant report

Variant	rs17131391
Chromosome Location	chr1:71133243-71133244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71131135..71133902-chr1:71140118..71142284,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493477	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131389	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131397	1.00[ASN][1000 genomes]
rs17131398	1.00[ASN][1000 genomes]
rs17131404	1.00[ASN][1000 genomes]
rs17131405	1.00[ASN][1000 genomes]
rs17131406	1.00[ASN][1000 genomes]
rs17131408	1.00[ASN][1000 genomes]
rs17131409	1.00[ASN][1000 genomes]
rs17131415	1.00[ASN][1000 genomes]
rs17536833	1.00[ASN][1000 genomes]
rs1932054	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61635159	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926249	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926259	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926263	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951353	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3420862	chr1:71132408-71133777	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71132000-71134600	Enhancers	Fetal Heart	heart
2	chr1:71132200-71133800	Enhancers	Rectal Smooth Muscle	rectum
3	chr1:71132400-71137600	Weak transcription	Fetal Lung	lung
4	chr1:71132600-71133400	Enhancers	K562	blood
5	chr1:71132800-71133800	Weak transcription	Left Ventricle	heart
6	chr1:71132800-71133800	Weak transcription	Right Atrium	heart
7	chr1:71132800-71136800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:71132800-71141000	Weak transcription	Gastric	stomach
9	chr1:71133000-71133400	Weak transcription	Pancreas	Pancrea
10	chr1:71133000-71133600	Weak transcription	Aorta	Aorta
11	chr1:71133200-71133800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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