Variant report

Variant	rs10493567
Chromosome Location	chr1:75761077-75761078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75756515..75758289-chr1:75759865..75761416,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10493560	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10493563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10493572	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes]
rs10493575	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11162740	1.00[ASN][1000 genomes]
rs11162743	1.00[ASN][1000 genomes]
rs11162745	1.00[ASN][1000 genomes]
rs11162747	1.00[ASN][1000 genomes]
rs11162748	1.00[ASN][1000 genomes]
rs12077329	1.00[ASN][1000 genomes]
rs12085115	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12087682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12127347	1.00[CHD][hapmap]
rs12401896	1.00[CHB][hapmap]
rs12405357	1.00[CHB][hapmap]
rs12408190	1.00[CHB][hapmap]
rs12408827	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12410333	1.00[CHB][hapmap]
rs12411159	1.00[CHB][hapmap]
rs1249664	1.00[CHB][hapmap]
rs1249666	1.00[CHB][hapmap]
rs1249667	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[TSI][hapmap]
rs1262045	1.00[CHB][hapmap]
rs1526515	1.00[ASN][1000 genomes]
rs17096320	1.00[ASN][1000 genomes]
rs17096323	1.00[ASN][1000 genomes]
rs17096324	1.00[ASN][1000 genomes]
rs17096342	1.00[ASN][1000 genomes]
rs17096353	1.00[ASN][1000 genomes]
rs17096388	1.00[ASN][1000 genomes]
rs17096391	1.00[ASN][1000 genomes]
rs17096399	1.00[ASN][1000 genomes]
rs17096401	1.00[ASN][1000 genomes]
rs17096406	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17096504	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096647	1.00[CHD][hapmap]
rs17096776	1.00[CHB][hapmap]
rs17096782	1.00[CHB][hapmap]
rs17097953	1.00[CHB][hapmap]
rs17097955	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[TSI][hapmap]
rs17567259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17581457	0.84[AMR][1000 genomes]
rs17584320	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17643802	0.88[AMR][1000 genomes]
rs17644957	1.00[CHB][hapmap]
rs1857353	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1876032	1.00[CHD][hapmap]
rs1876035	1.00[ASN][1000 genomes]
rs1913118	1.00[CHB][hapmap]
rs1936359	1.00[CHB][hapmap]
rs2040079	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2040082	1.00[CHB][hapmap]
rs2221458	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28817923	1.00[ASN][1000 genomes]
rs28856993	1.00[ASN][1000 genomes]
rs4540592	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4949855	1.00[CHB][hapmap]
rs5021868	1.00[ASN][1000 genomes]
rs60651982	1.00[ASN][1000 genomes]
rs983331	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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