Variant report

Variant	rs17097955
Chromosome Location	chr1:75811152-75811153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10493560	1.00[CHB][hapmap]
rs10493563	1.00[CHB][hapmap]
rs10493567	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[TSI][hapmap]
rs10493568	1.00[CHB][hapmap]
rs10493569	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10493572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493574	1.00[CEU][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493575	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs12085115	1.00[CHB][hapmap]
rs12087682	1.00[CHB][hapmap]
rs12122907	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12127347	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12401896	1.00[CHB][hapmap]
rs12405357	1.00[CHB][hapmap]
rs12408190	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12408226	0.82[ASN][1000 genomes]
rs12408827	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12410333	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12411159	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs1249664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1249665	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249667	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249668	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1262045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505259	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17096406	1.00[CHB][hapmap]
rs17096504	1.00[CHB][hapmap];0.82[MEX][hapmap]
rs17096647	1.00[CHD][hapmap]
rs17096776	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.87[MKK][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096851	0.82[ASN][1000 genomes]
rs17096888	0.82[ASN][1000 genomes]
rs17097953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567259	1.00[CHB][hapmap]
rs17567748	1.00[CHB][hapmap]
rs17581457	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584320	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17584397	0.82[ASN][1000 genomes]
rs17643802	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17644957	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1857353	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1858630	0.82[ASN][1000 genomes]
rs1858631	0.82[ASN][1000 genomes]
rs1876032	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1876033	0.82[ASN][1000 genomes]
rs1913118	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1936359	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2040079	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2040082	1.00[CHB][hapmap]
rs2221458	1.00[CHB][hapmap]
rs3899859	0.82[ASN][1000 genomes]
rs4540592	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4949666	0.90[ASN][1000 genomes]
rs4949855	1.00[CHB][hapmap]
rs58890548	0.82[ASN][1000 genomes]
rs60194830	0.82[ASN][1000 genomes]
rs74089232	0.82[ASN][1000 genomes]
rs74089237	0.82[ASN][1000 genomes]
rs74089238	0.82[ASN][1000 genomes]
rs74089245	0.82[ASN][1000 genomes]
rs983331	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75807000-75812400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:75808400-75811200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:75808800-75811600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:75808800-75813000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:75809000-75811200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:75809800-75811200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:75810400-75811400	Enhancers	HUVEC	blood vessel
8	chr1:75810400-75811800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:75811000-75811600	Flanking Active TSS	NH-A	brain
10	chr1:75811000-75812000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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