Variant report
Variant | rs1505259 |
---|---|
Chromosome Location | chr1:75779207-75779208 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10493569 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10493572 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs10493574 | 0.82[ASN][1000 genomes] |
rs12122907 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12127347 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12135977 | 1.00[CHB][hapmap] |
rs12408827 | 1.00[JPT][hapmap] |
rs1249664 | 1.00[JPT][hapmap] |
rs1249665 | 0.82[ASN][1000 genomes] |
rs1249666 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1249667 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1249668 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1249669 | 0.96[EUR][1000 genomes] |
rs1262045 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1405311 | 1.00[CHB][hapmap] |
rs17096643 | 0.88[CEU][hapmap];1.00[CHB][hapmap] |
rs17096647 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs17096776 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs17096782 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs17097953 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs17097955 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs17581457 | 0.82[ASN][1000 genomes] |
rs17643802 | 0.82[ASN][1000 genomes] |
rs1876032 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1876033 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56212906 | 0.83[AFR][1000 genomes] |
rs594470 | 1.00[CHB][hapmap] |
rs622132 | 1.00[CHB][hapmap] |
rs657221 | 1.00[CHB][hapmap] |
rs665288 | 1.00[CHB][hapmap] |
rs688513 | 1.00[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3368999 | chr1:75524762-75933220 | Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv1013952 | chr1:75716654-75936048 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
3 | nsv535004 | chr1:75716654-75936048 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:75779000-75779400 | Bivalent Enhancer | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr1:75779000-75779600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
3 | chr1:75779200-75779400 | Bivalent Enhancer | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |