Variant report

Variant	rs17096776
Chromosome Location	chr1:75808190-75808191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75804511..75807217-chr1:75808092..75810770,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10493560	1.00[CHB][hapmap]
rs10493563	1.00[CHB][hapmap]
rs10493567	1.00[CHB][hapmap]
rs10493568	1.00[CHB][hapmap]
rs10493569	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10493572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493574	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493575	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12085115	1.00[CHB][hapmap]
rs12087682	1.00[CHB][hapmap]
rs12122907	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12127347	1.00[JPT][hapmap]
rs12401896	1.00[CHB][hapmap]
rs12405357	1.00[CHB][hapmap]
rs12408190	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12408226	0.82[ASN][1000 genomes]
rs12408827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12410333	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12411159	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs1249664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1249665	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249667	1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249668	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1262045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505259	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17096406	1.00[CHB][hapmap]
rs17096504	1.00[CHB][hapmap]
rs17096782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096851	0.82[ASN][1000 genomes]
rs17096888	0.82[ASN][1000 genomes]
rs17097953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097955	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.87[MKK][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567259	1.00[CHB][hapmap]
rs17567748	1.00[CHB][hapmap]
rs17581457	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584320	1.00[CHB][hapmap]
rs17584397	0.82[ASN][1000 genomes]
rs17643802	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17644957	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1857353	1.00[CHB][hapmap]
rs1858630	0.82[ASN][1000 genomes]
rs1858631	0.82[ASN][1000 genomes]
rs1876032	1.00[JPT][hapmap]
rs1876033	0.82[ASN][1000 genomes]
rs1913118	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1936359	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2040079	1.00[CHB][hapmap]
rs2040082	1.00[CHB][hapmap]
rs2221458	1.00[CHB][hapmap]
rs3899859	0.82[ASN][1000 genomes]
rs4540592	1.00[CHB][hapmap]
rs4949666	0.90[ASN][1000 genomes]
rs4949855	1.00[CHB][hapmap]
rs58890548	0.82[ASN][1000 genomes]
rs60194830	0.82[ASN][1000 genomes]
rs74089232	0.82[ASN][1000 genomes]
rs74089237	0.82[ASN][1000 genomes]
rs74089238	0.82[ASN][1000 genomes]
rs74089245	0.82[ASN][1000 genomes]
rs983331	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75805000-75808200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:75805000-75808200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:75807000-75809200	Enhancers	Brain Germinal Matrix	brain
4	chr1:75807000-75812400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:75807200-75808200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:75807400-75808400	Weak transcription	Fetal Brain Female	brain
7	chr1:75807600-75808400	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr1:75807600-75808800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:75807800-75809200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:75808000-75808800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr1:75808000-75809200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:75808000-75809200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:75808000-75809800	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links