Variant report
| Variant | rs4949666 |
|---|---|
| Chromosome Location | chr1:75818830-75818831 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10493572 | 0.90[ASN][1000 genomes] |
| rs10493574 | 0.90[ASN][1000 genomes] |
| rs10493575 | 0.91[ASN][1000 genomes] |
| rs12408190 | 0.91[ASN][1000 genomes] |
| rs12408226 | 0.91[ASN][1000 genomes] |
| rs12408827 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12410333 | 0.91[ASN][1000 genomes] |
| rs12411159 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1249665 | 0.90[ASN][1000 genomes] |
| rs1249666 | 0.90[ASN][1000 genomes] |
| rs1249667 | 0.90[ASN][1000 genomes] |
| rs1262045 | 0.90[ASN][1000 genomes] |
| rs17096776 | 0.90[ASN][1000 genomes] |
| rs17096782 | 0.90[ASN][1000 genomes] |
| rs17096851 | 0.91[ASN][1000 genomes] |
| rs17096888 | 0.91[ASN][1000 genomes] |
| rs17097953 | 0.90[ASN][1000 genomes] |
| rs17097955 | 0.90[ASN][1000 genomes] |
| rs17581457 | 0.90[ASN][1000 genomes] |
| rs17584397 | 0.91[ASN][1000 genomes] |
| rs17643802 | 0.90[ASN][1000 genomes] |
| rs17644957 | 0.91[ASN][1000 genomes] |
| rs1858630 | 0.91[ASN][1000 genomes] |
| rs1858631 | 0.91[ASN][1000 genomes] |
| rs1913118 | 0.91[ASN][1000 genomes] |
| rs1936359 | 0.91[ASN][1000 genomes] |
| rs3899859 | 0.91[ASN][1000 genomes] |
| rs58890548 | 0.91[ASN][1000 genomes] |
| rs60194830 | 0.91[ASN][1000 genomes] |
| rs74089232 | 0.91[ASN][1000 genomes] |
| rs74089237 | 0.91[ASN][1000 genomes] |
| rs74089238 | 0.91[ASN][1000 genomes] |
| rs74089245 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368999 | chr1:75524762-75933220 | Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1013952 | chr1:75716654-75936048 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv535004 | chr1:75716654-75936048 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1455 | chr1:75812377-75864182 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:75818800-75819400 | Enhancers | K562 | blood |
