Variant report

Variant	rs10493574
Chromosome Location	chr1:75803142-75803143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75802617..75804536-chr1:75804779..75807311,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10493569	0.82[ASN][1000 genomes]
rs10493572	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493575	0.82[ASN][1000 genomes]
rs12122907	0.82[ASN][1000 genomes]
rs12408190	0.82[ASN][1000 genomes]
rs12408226	0.82[ASN][1000 genomes]
rs12408827	0.90[ASN][1000 genomes]
rs12410333	0.82[ASN][1000 genomes]
rs12411159	0.90[ASN][1000 genomes]
rs1249664	1.00[CEU][hapmap]
rs1249665	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249666	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249667	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249668	0.82[ASN][1000 genomes]
rs1262045	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505259	0.82[ASN][1000 genomes]
rs17096776	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096782	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096851	0.82[ASN][1000 genomes]
rs17096888	0.82[ASN][1000 genomes]
rs17097953	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097955	1.00[CEU][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17581457	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584397	0.82[ASN][1000 genomes]
rs17643802	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17644957	0.82[ASN][1000 genomes]
rs1858630	0.82[ASN][1000 genomes]
rs1858631	0.82[ASN][1000 genomes]
rs1876033	0.82[ASN][1000 genomes]
rs1913118	0.82[ASN][1000 genomes]
rs1936359	0.82[ASN][1000 genomes]
rs3899859	0.82[ASN][1000 genomes]
rs4949666	0.90[ASN][1000 genomes]
rs58890548	0.82[ASN][1000 genomes]
rs60194830	0.82[ASN][1000 genomes]
rs74089232	0.82[ASN][1000 genomes]
rs74089237	0.82[ASN][1000 genomes]
rs74089238	0.82[ASN][1000 genomes]
rs74089245	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75797400-75804600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:75799800-75803800	Weak transcription	Fetal Brain Male	brain
3	chr1:75800000-75803400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:75800600-75805000	Weak transcription	HepG2	liver
5	chr1:75802800-75803600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links