Variant report

Variant	rs10493569
Chromosome Location	chr1:75773973-75773974
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75770101..75774631-chr1:75777492..75782800,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10493572	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10493574	0.82[ASN][1000 genomes]
rs12122907	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127347	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12135977	1.00[CHB][hapmap]
rs12408827	1.00[JPT][hapmap]
rs1249664	1.00[JPT][hapmap]
rs1249665	0.82[ASN][1000 genomes]
rs1249666	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1249667	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1249668	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249669	0.92[EUR][1000 genomes]
rs1262045	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1405311	1.00[CHB][hapmap]
rs1505259	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096643	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17096647	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17096776	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17096782	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17097953	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17097955	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17581457	0.82[ASN][1000 genomes]
rs17643802	0.82[ASN][1000 genomes]
rs1876032	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1876033	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594470	1.00[CHB][hapmap]
rs622132	1.00[CHB][hapmap]
rs657221	1.00[CHB][hapmap]
rs665288	1.00[CHB][hapmap]
rs688513	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75771400-75774200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:75772800-75774400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:75773000-75774400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:75773200-75774000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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