Variant report
| Variant | rs17096643 |
|---|---|
| Chromosome Location | chr1:75765313-75765314 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:75763247..75766702-chr1:75766779..75769918,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10493569 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11162764 | 0.86[ASN][1000 genomes] |
| rs12122907 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12127347 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12135977 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs1249668 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes] |
| rs1249669 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1405311 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs1505259 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17096326 | 0.86[ASN][1000 genomes] |
| rs17096398 | 0.86[ASN][1000 genomes] |
| rs17096647 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1876032 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes] |
| rs1876033 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1876034 | 0.86[ASN][1000 genomes] |
| rs41289240 | 0.86[ASN][1000 genomes] |
| rs587124 | 0.86[ASN][1000 genomes] |
| rs594470 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs622132 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs657221 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs6593568 | 0.86[ASN][1000 genomes] |
| rs665288 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs688513 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs688539 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368999 | chr1:75524762-75933220 | Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1013952 | chr1:75716654-75936048 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv535004 | chr1:75716654-75936048 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv945903 | chr1:75761528-75765315 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
