Variant report
| Variant | rs1876033 |
|---|---|
| Chromosome Location | chr1:75778365-75778366 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10493569 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10493572 | 0.82[ASN][1000 genomes] |
| rs10493574 | 0.82[ASN][1000 genomes] |
| rs12122907 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12127347 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1249665 | 0.82[ASN][1000 genomes] |
| rs1249666 | 0.82[ASN][1000 genomes] |
| rs1249667 | 0.82[ASN][1000 genomes] |
| rs1249668 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1249669 | 0.89[EUR][1000 genomes] |
| rs1262045 | 0.82[ASN][1000 genomes] |
| rs1505259 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17096647 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17096776 | 0.82[ASN][1000 genomes] |
| rs17096782 | 0.82[ASN][1000 genomes] |
| rs17097953 | 0.82[ASN][1000 genomes] |
| rs17097955 | 0.82[ASN][1000 genomes] |
| rs17581457 | 0.82[ASN][1000 genomes] |
| rs17643802 | 0.82[ASN][1000 genomes] |
| rs1876032 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368999 | chr1:75524762-75933220 | Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1013952 | chr1:75716654-75936048 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv535004 | chr1:75716654-75936048 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:75774400-75779000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
